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Unigene SGN-U287442

Unigene Basic Information

Unigene ID:	SGN-U287442
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	287442
mRNA sequence:	Length: 281 bp

>SGN-U287442 Solanum tuberosum #4 (1 members)
CCGAAGCTACGCTTTGAGCAACACAGTTCAGTGAGCTCACTCTAATCTTCGCCATGGGTCGTATGCACAGTCGCGGTAAAGGTATCTCAG
CGTCGGCTCTTCCTTACAAGAGAACTCCTCCCAGTTGGCTTAAGATCTCCGCTCCAGATGTTGAGGACAATATCTGCAAGTTTGCGAAAA
AAGGATTGACACCTTCACCAATTGGTGGGATTCCTCCTGAATCTCATGGAATTGGTCCAGGTAAGAATGGCACTGGGAACCAGAATTTGC
CTATTCTCCAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E457142
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82621170\|gb\|ABB86273.1\|	122	2e-26	80.26	228 bp (81.1%)	1
Description:	cytoplasmic ribosomal protein S13-like [Solanum tuberosum]
arabidopsis	blastx	At4G00100.1	104	1e-23	68.42	228 bp (81.1%)	1
Description:	Symbols: RPS13, PFL2, ATRPS13A \| ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of …
swissprot	blastx	P62302	113	4e-25	73.68	228 bp (81.1%)	1
Description:	40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97742 (93 Aa)

PKLRFEQHSSVAHSNLRHGSYAHRGKGISASALPYKRTPPSWLKISAPDVEDNICKFAKKGLTPSPIGGIPPESHGIGPGKNGTGNQNLP
ILQ

SignalP predicts non-secretion with a score of 0.041

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P229486 (88 Aa)

ATQFSELTLIFAMGRMHSRGKGISASALPYKRTPPSWLKISAPDVEDNICKFAKKGLTPSPIGGIPPESHGIGPGKNGTGNQNLPILQ

SignalP predicts non-secretion with a score of 0.187

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	245	Ribosomal_S15	63
2	22633	Ribosomal_S15	23
5	56780	Ribosomal_S15	23
1.1	101607	Ribosomal protein S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) S15/NS1 RNA-binding Ribosomal S13S15 N-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	61
2	119205	Ribosomal protein S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) S15/NS1 RNA-binding Ribosomal S13S15 N-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	19
5	129490	Ribosomal protein S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) S15/NS1 RNA-binding Ribosomal S13S15 N-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	20

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U259406	Solanum tuberosum #3

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