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Unigene SGN-U287038

Unigene Basic Information

Unigene ID:	SGN-U287038
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	287038
mRNA sequence:	Length: 219 bp

>SGN-U287038 Solanum tuberosum #4 (1 members)
ATCTGAAGCTGCTATTAATGAACAGATCAAAATAGGCATACATAGCATGATAAACGTAAGAAACATTGTATTCCACATTGATCGAGACAA
CGTTGCTCTTAAGGGTCTAGCCAATTTTTTCAAGGAATCTAGTGCAGCAGGAAAGAGAGCACGCTGAGCAAATTTATGGAATACCAGAAC
AAACGCGTGGTGGCGACAGGTGAACGCTGCCAGCTCTAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	SWST	Stolon	5942	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E557738
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P229070 (73 Aa)

IELAAFTCRHHAFVLVFHKFAQRALFPAALDSLKKLARPLRATLSRSMWNTMFLTFIMLCMPILICSLIAASD

SignalP predicts non-secretion with a score of 0.259

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97377 (66 Aa)

SEAAINEQIKIGIHSMINVRNIVFHIDRDNVALKGLANFFKESSAAGKRAAEQIYGIPEQTRGGDR

SignalP predicts non-secretion with a score of 0.036

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	729	Ferritin_like	26
2	22815	Ferritin_like Ferritin Ferritin_Dps	19
5	56960	Ferritin_like Ferritin Ferritin_Dps	19
1.1	102006	Ferritin-like Ferritin-related Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin/ribonucleotide reductase-like Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199)	25
2	119261	Ferritin-like Ferritin/ribonucleotide reductase-like Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin-related	18
5	129604	Ferritin-like Ferritin/ribonucleotide reductase-like Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin-related	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U259254	Solanum tuberosum #3

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