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Unigene SGN-U283814

Unigene Basic Information

Unigene ID:	SGN-U283814
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	283814
mRNA sequence:	Length: 455 bp

>SGN-U283814 Solanum tuberosum #4 (2 members)
TTCTCAACACCTCAAATGAAAAACTCCTTCCAATTCGTCACTTGCAAAATCCATAATTCAAAATCCCCTTTTTTCACTTCTTGAATCTTG
ATTGTGATGATCAAACAACCCTTCTTGTTAACCAAATTTACTCCATTTTCAAGCAAATCAAAGCACACCCTTTTCACATTCCACTGCAAT
TTCTCCATAAAAATGGCTTCTTTAACTGCCAGAACCACACCCACTGTTCAAAATGTTCCAGGACTAACCCCTGAAGAAATGGAGAGAGTT
TGTGAACAGACTTTTCAGAGATATGAGTCTGGTGGTTTGGGTAAGAGGAAAGGTAAAGGGGTTGCTATTGTTTGGTTCACGAATGATTTG
AGAGTGCTGGATAATGAAGCTCTTTTAAGAGCTTGGGTTTCATCTGAAGCAATCTTGCCTGCGTATTGAGTTGATCCTAAGCTTTTTGGG
ACTAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|110825715\|sp\|Q38JU2.2\|CRYD_SOLLC	236	8e-61	96.64	357 bp (78.5%)	2
Description:	RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Fla…
arabidopsis	blastx	At5G24850.1	91.3	2e-19	57.69	228 bp (50.1%)	2
Description:	Symbols: CRY3 \| CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding \| chr5:853540…
swissprot	blastx	Q38JU2	236	5e-62	96.64	357 bp (78.5%)	2
Description:	Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P86388 (88 Aa)

MASLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFTNDLRVLDNEALLRAWVSSEAILPGIELILSFLGLX

SignalP predicts non-secretion with a score of 0.073

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P225787 (114 Aa)

ILIVMIKQPFLLTKFTPFSSKSKHTLFTFHCNFSIKMASLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFTN
DLRVLDNEALLRAWVSSEAILPAY

SignalP predicts non-secretion with a score of 0.393

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	489	DNA_photolyase_N	36
2	23463	FAD_binding_N DNA_photolyase_N DNA_photolyase_2	12
5	61448	DNA_photolyase_1 FAD_binding_N FAD_binding_7 DNA_photolyase_N DNA_photolyase_2	4
1.1	101857	DNA photolyase N-terminal - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281)	32
2	120189	DNA photolyase FAD-binding DNA photolyase N-terminal - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281) DNA photolyase FAD- binding N-terminal - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281)	10
5	134002	DNA photolyase FAD-binding DNA photolyase N-terminal - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281) Deoxyribodipyrimidine photolyase class 1 - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281) DNA photolyase FAD- binding N-terminal - Molecular Function: DNA photolyase activity (GO:0003913) - Biological Process: DNA repair (GO:0006281)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U257198	Solanum tuberosum #3

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