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Unigene SGN-U283732

Unigene Basic Information

Unigene ID:	SGN-U283732
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	283732
mRNA sequence:	Length: 439 bp

>SGN-U283732 Solanum tuberosum #4 (2 members)
AAAAAGTAAGAAACAGAGCTAAAGCTACGTAACCAAAAAACAGAGCAACTCTCAGTGTGAGAAACTTTTACACTTTTTCAAAAGTGTAAA
GTGAGAAAACAAGAAAAAAAGTTTAGGCTTTTAAATGGGTTCTTGTAAAGAAGAAGAACCAAAATGGTTGTGGGTTAATGGACCTATTAT
AGTAGGTGCAGGTCCTTCTGGTTTAGCAGATTCAGCTTGTCTTAAAGAAAATGGAGTCCCTTCACTCATTCTTGAGAGAAGTGATTGTAT
TGCTTCTTTATGGAAACAAAAGACTTATGATCGCTTAAAACTTCATCTTCCTAAACAATTCTGTCAACTCCCATTGTTTGATTTCCCTGA
AAATTTGCCAAAATACCCCACAAAACACCAGTTCATTTCTTACCTTGAATCTTATGCTAAACACTTTTCAATCACCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118624210\|emb\|CAJ46041.1\|	216	5e-55	95.24	315 bp (71.8%)	3
Description:	flavin monooxygenase-like protein [Solanum lycopersicum]
arabidopsis	blastx	At5G11320.1	161	2e-40	68.57	315 bp (71.8%)	3
Description:	Symbols: YUC4 \| YUC4 (YUCCA4); monooxygenase \| chr5:3611430-3613362 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P225704 (105 Aa)

MGSCKEEEPKWLWVNGPIIVGAGPSGLADSACLKENGVPSLILERSDCIASLWKQKTYDRLKLHLPKQFCQLPLFDFPENLPKYPTKHQF
ISYLESYAKHFSITP

SignalP predicts non-secretion with a score of 0.154

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P86310 (105 Aa)

MGSCKEEEPKWLWVNGPIIVGAGPSGLADSACLKENGVPSLILERSDCIASLWKQKTYDRLKLHLPKQFCQLPLFDFPENLPKYPTKHQF
ISYLESYAKHFSITP

SignalP predicts non-secretion with a score of 0.154

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	112	FAD_pyr_redox Flav_cont_mnoxgn	120
2	22687	Pyridine_redox_2 FAD_pyr_redox Flav_cont_mnoxgn Pyr_redox	21
5	56831	Pyridine_redox_2 FAD_pyr_redox Flav_cont_mnoxgn Pyr_redox	21
1.1	101474	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	111
2	119091	Pyridine nucleotide-disulphide oxidoreductase class-II - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FAD-dependent pyridine nucleotide-disulphide oxidoreductase	20
5	129464	Pyridine nucleotide-disulphide oxidoreductase class-II - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FAD-dependent pyridine nucleotide-disulphide oxidoreductase	20

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U258271	Solanum tuberosum #3

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