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Unigene SGN-U282728

Unigene Basic Information

Unigene ID:	SGN-U282728
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	282728
mRNA sequence:	Length: 447 bp

>SGN-U282728 Solanum tuberosum #4 (2 members)
TTTCAAGAAACTTTAACTTCTTATTGAAAATACTACTACTACATACATAGTTATGATAATCAAAACTAATTATACACTATTTTCTATTTA
TAATTAGCCAAACTATCGCTATAATTGATAATCAGGACTCAAAAAAAGTACCGCTATGAAATTTCCTCAATCATGATCTTGAGGTTTGAA
GGGCTTATATGTCTTGAGATCTTGTGTAAGGCCTTCTATGGATCCAACAGCAGCAACAAGTGACACAATCAAGCAAGCCCAACTCAATAT
ATGTAACCATATCCATTTGAATGAATATTTAGGTATTTTCCTTTGTGCAATGTGCATTTCTATTGGGAAATAAACAGTTAATGGATAAAA
TGAAGCTGCCCCAATTAAGCCTAATATTGCATTGAAAAATGGGAAAATCATAGCAATTATTGCTGTTATTATAACATATATTGTCCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15240523\|ref\|NP_199774.1\|	130	6e-29	76.62	231 bp (51.7%)	-3
Description:	AAP6 (AMINO ACID PERMEASE 6); acidic amino acid transmembrane transporter/ amino acid transmemb…
arabidopsis	blastx	At5G49630.1	130	4e-31	76.62	231 bp (51.7%)	-3
Description:	Symbols: AAP6 \| AAP6 (AMINO ACID PERMEASE 6); amino acid permease \| chr5:20159907-20163667 REVERSE
swissprot	blastx	P92934	130	4e-30	76.62	231 bp (51.7%)	-3
Description:	Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P224685 (96 Aa)

RTIYVIITAIIAMIFPFFNAILGLIGAASFYPLTVYFPIEMHIAQRKIPKYSFKWIWLHILSWACLIVSLVAAVGSIEGLTQDLKTYKPF
KPQDHD

SignalP predicts secretion with a score of 0.599

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P85333 (100 Aa)

RTIYVIITAIIAMIFPFFNAILGLIGAASFYPLTVYFPIEMHIAQRKIPKYSFKWIWLHILSWACLIVSLVAAVGSIEGLTQDLKTLSPS
NLKIMIEEIS

SignalP predicts secretion with a score of 0.599

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	71	AA/rel_permease2	167
2	22340	AA/rel_permease2	34
5	56543	AA/rel_permease2	33
1.1	101450	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	143
2	118563	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	53
5	129214	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	30

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264077	Solanum tuberosum #3

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