Sol Genomics Network

Unigene SGN-U280077

Unigene Basic Information

Unigene ID:	SGN-U280077
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	280077
mRNA sequence:	Length: 538 bp

>SGN-U280077 Solanum tuberosum #4 (3 members)
CGATTGCGAAGTCTCCTTTTGTCTTCTCCATCAACAGCAACTTTTTTTTCCCCTTTTCCTCGAAAAATTCCTCCACTGATTTGTTCTTCT
GCTTCTTCTCGTGAATTCAATTTCTCTGAGAGAGTGTGTGTGTGTGAGATCGGCGATGGGGAGAGGAAAGATAGTGATAAGGAGGATCGA
TAATTCGACGAGCAGGCAAGTGACGTTCTCGAAGAGGAGAAATGGATTGTTGAAGAAGGCGAAGGAGCTAGCGATTCTGTGCGATGCGGA
GGCCGGAGTCATTATCTTCTCCAGTACTGGAAAACTCTATGAATATTCAAGCACCAGCATGAAGTCGGTGATTGAAAGATACAACAAAAC
AAAGGAGGAGAATCATCAATTGGCAACTCCAACTTCTGAGGTTAGGTTTTGGCAAAGGGAAGCGGCAATGCTGAGGCAACAACTACAGAA
CTTGCAAGAGAATCACCGACAAATGATGGGTGAAGAGCTTTCTGGTCTGAGCATCAAAGATTTGCAGAACTTGGAGAACCAACTGGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	41	TF_MADSbox	256
2	22000	TF_MADSbox	192
5	56273	TF_MADSbox	182
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U252045	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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