Sol Genomics Network

Unigene SGN-U276158

Unigene Basic Information

Unigene ID:	SGN-U276158
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	276158
mRNA sequence:	Length: 1743 bp

>SGN-U276158 Solanum tuberosum #4 (5 members)
GAAAAAGGAAGATAGAAGAACACAATTTCTTCTATTCTAAATAGTACTTGAAGAGAAATAAAGAGGGAGTTGGTTCAAGAGGACGTAAAA
AACAAGGAACGCGTTAGGAAGCTACCTAATATTTTTTTCTACTACAATTTTGAATCACCTTTGTTACTTTCCGCAAAGTAAAACAAAGGA
CAAGTAGCAGCTTTTTCTTCTCTTAACTCTTTCTGAAAAAAGGATCTCTATTATTGATGAATATTGCATTACCAGAAATGCTACATAACA
ACACCACCAGCAATGGAGGAAATGGAAGCAGCGTGCTTGAACGACAACGAGCTAGAATGAAATGGCATCAAGAACAGGTGCAGCAACAAG
AGATGAGTTATTTTAATGGACAAAATGATCAACTGATGAGTTCTTTTCATCAAACGTCTGAAGCTCAACAATTTCATGGGTTGATCAATG
TAAATGATCAGAGTCTTAATGAGCTTGTGACTCGGGCAATTAAGCCAGACCCCTGTATGGAGAACAATTGGGGTGATTTTGGGACCACTG
ATAATAATGGTTTTGGTTATGTTCCAGTTGGAGTTGGACACGGAGGAATGTCACACCCAACTGAAATGAATTATGCTATTTCAAGAACTA
CAAGTTGCCCGCCTACCATGGCGGACAATGCTGTTTCTGCTGTTAAACCCAAAGAGACTATGCTGCGTTCTAACAGAGGCAGTGAGAACT
TCAAGAAAAGGAAAGCAGATAAGAATCAACATCTCAAGGAGGTTGAAGAAGAGGAAACCAAAGACAAGAAATTGAAAGAATGCATCGAAG
AGGGGGATGATTCTTCCAAGGTAACAACAGAGAAAAAAAGCAACAAAAGGAGCGCCAATAACAGTAGCAACAGTAAGGAAAATTCTGATA
CTTCAAAGGAGAAGTCCAAAATTACCCGATGATAAAAAGCTCGACTATATACATGTCAGAGCACGTCGAGGTCAAGCCACTGATAGCCAC
AGTTTGGCTGAAAGAGTAAGAAGGGAAAAGATAAGTGAGAGAATGAGATTTCTGCAAGATTTAGTACCAGGTTGTAACAAGATAACAGGG
AAAGCAGGAATGCTAGATGAAATAATCAACTACGTCCAATCTCTCCAAAGACAAGTAGAGTTCCTATCCATGAAACTAGCTGCTGTTAAT
CCAAGACTTGATATCGATGTAGACAATTTCTTCAACAAAGATATATTTGCAACTAGCACATCTACCTTTTCCACAGTGGGAGCTGGAACA
TCATCTGAAATGCTTGGTATGGCCCAACGCCAGTTCAATTCATTGCAGCAAATAATGTCAAGTTCTGGATTAGAAATGGATATTCTAAAT
CTAAACGAAATGGCACTACGTAGAACCACTAGTGCTCCTGTACCAATTCCTGAAATGTTTCTTGACTCATCCAGTATCAATCAAGTTCAG
AGCTTTCAAACTTGGGACACTGATTTAGATAACATGTATGCAATGGAGCTTCAACAAGGAAGATCAGGACAGTTTTTTCCCCATCCGTGT
ACAGGTTTCCCTGAAGCTGGACATGACCTGAAGATGGAAATGTGACCTTACAATTCTAGTCATTCAAGATCCTTGAATGACTTCACCTCA
GATGTCATGGATCCTGATTCTTTTTTTGCAAGTACATAACATAGTATATTCTGTATGTAAATGTTGCAGTTCAAGAGTATCAAAGCAATA
CTATGACACTGTTCATTGAAATCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (5)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	12	HLH_basic	493
2	22064	HLH_basic	85
5	88258		1
1.1	101381	Helix-loop-helix DNA-binding	441
2	118531	Helix-loop-helix DNA-binding Basic helix-loop-helix dimerisation region bHLH - Cellular Component: nucleus (GO:0005634) - Molecular Function: transcription regulator activity (GO:0030528) - Biological Process: regulation of transcription (GO:0045449)	63
5	133433	Helix-loop-helix DNA-binding Basic helix-loop-helix dimerisation region bHLH - Cellular Component: nucleus (GO:0005634) - Molecular Function: transcription regulator activity (GO:0030528) - Biological Process: regulation of transcription (GO:0045449)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U249033	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: