Sol Genomics Network

Unigene SGN-U275179

Unigene Basic Information

Unigene ID:	SGN-U275179
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	275179
mRNA sequence:	Length: 1563 bp

>SGN-U275179 Solanum tuberosum #4 (6 members)
CAAACCTTCTGAAAAAACCCTTTTTTATCAGCAATGGCCGCCCAAACATACCTTCATCTTCACCCTCTTCGATGTCTTCCATTTCCACTC
AAGATCCAAAACCCACAAAACCAAACCCATCATTTCAAACAAAAACCCAGAAATCCAGTCGTCTGCAAGCTTCGAGTAGCTGTAATCGGC
GGCGGTCCAGCTGGGTCTTCAGCTGCAGAAGCTCTAGCCACTGGCGGAATCGAAACTTTCCTCTTTGAACGAAGTCCAGCTACAGCCAAG
CCATGCGGCGGCGCCATTCCACTATGCATGCTCGACGAATTCTCAATACCTTTAAATCTCATCGATCGCCGCGTCACTCAGATGCGAATC
GTTTCTCCGTCAAATCTCGTCGTTGATTTCGGTAAAACCCTAAAACCCCATGAATTCATCGCAATGCTCCGGCGAGAAGTGCTCGATTCA
TTCCTCCGGCAGCGGGCTGAATCTAGCGGCGCCACTCTTCTCAAAGCACTGGTCACCAACCTCGTGGTCCCCACATCCACACGCGAGCCG
TACGTCATTCACTACACCATGGATAACTGCCAGCATCAGCTCGCCGTCGATGTCATCATCGGCGCCGACGGAGCCAATAGCCGTGTAGCT
AAATCGATCAAAGCTGGAAATTACATTACTGCCATTGCTTTCCAAGAGAGGATCAAATTACCGGAGGACAAAATGGGGTATTACGAAAAT
TTAGCTGAGATGTACATAGGGAATGACGTGTCACCCGATTTTTACGCTTGGGTGTTCCCTAAATGCGACCACGTGGCAGTGGGGACGGGG
ACGGTCTGCTCAAAATCCGATATCAAATCACTTCAACACGCTATCAGAGCACGAGTCAAACCAAAAATCGAAGGCGGGAAAGTGATCAAA
GTAGAAGCTCATCCCATACCAGAGCATCCGCGCCCGGTTAGGGTCCGCGGACGTGTCGCTCTAGTAGGGGACGCAGCCGGATACGTAACA
AAATGTTCGGGCGAAGGAATATATTTCGCGGCGAAAAGCGGAAGAATTTGTGGGGAAGCAATAGTGAAGGCTTCAGAGGGTGGAGAGAAC
ATGATCAATGAAGACGACTTGAAAAGGGAATATTTAAGGAAATGGGATGACAAGTATTTTACTACATTCAAGTTCTTGGATGTGTTGCAA
AAAGTGTTTTATGGTAATAATGCAGCAAGGGAGGCATTGGTGGAGTTGTGTGGAGATGAATATGTGCAAAGGATGACATTTGATAGCTAT
TTGTATAAGAATTTAGCTAGTGGGAATAGGTGGGAAGATGCTAAAATGGTGATGAACACAGTTTCAAGTTTGGTTAGGTGCAACATTATG
GGGAGAGAAGTGGAAGCATCTGCCCAAAAAATTCTCTCAAGAGTATAGGTTATCTTAGTAGTCAAATATTTCAATTTGGTTTATGTTTAC
TATTATGTCATTTGTTGTATGTGTAACCAAGCTAGACTCTATGTATGTGTTTTCATTACATCTTATTTCCTCTTGTCTTAATCTATGGTA
AGGAAATATTTAAAAATGATTATAAATTAAATA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1822	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10
2	23867	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10
5	57936	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10
1.1	102037	FAD-dependent pyridine nucleotide-disulphide oxidoreductase Geranylgeranyl reductase plants and cyanobacteria Geranylgeranyl reductase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: geranylgeranyl reductase activity (GO:0045550) Aromatic-ring hydroxylase - Biological Process: electron transport (GO:0006118) - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) NAD-binding site Geranylgeranyl reductase plantal and prokaryotic	24
2	119574	Geranylgeranyl reductase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: geranylgeranyl reductase activity (GO:0045550) NAD-binding site FAD-dependent pyridine nucleotide-disulphide oxidoreductase Geranylgeranyl reductase plants and cyanobacteria Aromatic-ring hydroxylase - Biological Process: electron transport (GO:0006118) - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Geranylgeranyl reductase plantal and prokaryotic	14
5	129904	Geranylgeranyl reductase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: geranylgeranyl reductase activity (GO:0045550) NAD-binding site FAD-dependent pyridine nucleotide-disulphide oxidoreductase Geranylgeranyl reductase plants and cyanobacteria Aromatic-ring hydroxylase - Biological Process: electron transport (GO:0006118) - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Geranylgeranyl reductase plantal and prokaryotic	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U248041	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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