Sol Genomics Network

Unigene SGN-U274897

Unigene Basic Information

Unigene ID:	SGN-U274897
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274897
mRNA sequence:	Length: 1332 bp

>SGN-U274897 Solanum tuberosum #4 (6 members)
GATGGGCTTAAATACCATCCCACCATTCGATGCCTCCAGGAGTCATCAAAGGCCAAGGTACAATTGGAACGGAGATAAACCGTCAACTTA
AGGACATTCATGCAGTGTTTGTACCTGTTGGTGGTGGAGGTCTAATATCTGGTGTTGCTGCCTTTTTCAAACAAATTGCCCCAAATACAA
AAATTATTGGAGTTGAGCCATATGGTGCAGCTTCAATGACATTGTCATTGCATGAAGGACATAGAGTAAAATTGGAAAATGTTGATACTT
TTGCTGATGGTGTAGCTGTTGCACTTGTTGGTGAATACACTTTTGCAAAATGCCAAGAGTTAATTGATGGAATGGTACTTGTTAGAAATG
ATGGTATTAGTGCTGCAATAAAGGATGTGTATGATGAAGGAAGGAACATATTAGAGACATCAGGTGCAGTTGCCATAGCTGGAGCTGCAG
CCTATTGTGAATTCTATAACATTAAAAATGAAAATATTGTAGCAATTGCAAGTGGAGCTAATATGGATTTCAGCAAACTACACAAAGTTA
CAGAGTTAGCAGAGTTAGGTTCAGACAACGAAGCTTTGTTAGCTACTTTTATGATAGAACAACCAGGAAGCTTCAAGACATTTGCTAAAC
TTGTGGGCTCTATGAATATTACTGAAGTGACATACAGATTCACTTCTGAAAGAAAAGAAGCTCTAGTTTTGTACAGAGTTGATGTTGATG
AAAAATCAGATCTTGAAGAAATGATTAAGAAATTGAATTCATCAAATATGAATACTTTTAATTTCTCACATAATGAATTGGTTGCAGAAC
ATCTAAAACATTTGGTTGGTGGCTCAGCAAGTATCAATGATGAAATTTTCGGTGAATTTACTTTACCTGAGAAGGCTGGAACTTTAAGCA
CATTCTTAGAAGCTTTCTCCCCTCGTTGGAATATAACTTTATGCCGTTACCGTGATCAGGGAGATATAAATGGAAATGTGTTGGTGGGAT
TCCAAGTCCCTCAAAGTGAGATGGATGAGTTCAAAAGTCAAGCTGATGGACTTGGTTACCCATATGAACTTGACAATTTCAATGAGGCTT
TTAACATTGTAGTAGCTGAGTGAAGAAAAAAAAATTGTTGTTCTTAGTTGCAATTAATGCAAATCCTACTTTTTTTATAAAAAAATAACC
GTGTTGTACGGATCAGCTTATTAAGGAATAACTGATGAATTAACTTGTTATAAGTTAATTTCATATTGTATGAATAATAAGATGCATGTA
TCCAATGTAATGGCCTTTTAAGTTTCATTTAGAAACAATTTATTATTGTCAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X67846	threonine deaminase	threonine deaminase

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	199	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthK	74
2	23195	Cysta_beta_synth Thi4 Thr_synthase Thr_dehydrateI Cys_synthM B6_enzyme_beta Cys_synthKM Trp_synth_beta S/T_dehydrtse_BS Thr_dehydrateII Cys_synthK Trp_synth_b_like Amcycprop_deam HTH_GntR ThrDh_C PyridoxP_deam	15
5	57504	Cysta_beta_synth Thi4 Thr_synthase Thr_dehydrateI Cys_synthM B6_enzyme_beta Cys_synthKM Trp_synth_beta S/T_dehydrtse_BS Thr_dehydrateII Cys_synthK Trp_synth_b_like Amcycprop_deam HTH_GntR ThrDh_C PyridoxP_deam	13
1.1	101578	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	70
2	119604	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14
5	129927	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U261759	Solanum tuberosum #3
SGN-U266862	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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