Sol Genomics Network

Unigene SGN-U273561

Unigene Basic Information

Unigene ID:	SGN-U273561
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273561
mRNA sequence:	Length: 594 bp

>SGN-U273561 Solanum tuberosum #4 (2 members)
CTTTAATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTATCTGTGCTTGCGCTTGTCTTACTATCCCCTGTTT
GGGCTGATAATTTCTACCAAGACGCGACGGTCACCTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCGCCTTGTCCC
TTGACAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAATATTTATTTGGAAGGTTCGATATGCAGCTCAAACTCGTACCTGGAAATT
CTGCTGGCACTGTCACCACATTCTACGTAAGTGTTTTCGTATTCCTACTATAACTAATTAACAAAAAAAAAAACATGTCCACTCAAGCGT
TTTTTTGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCACGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACAACCTT
ACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAACAAAGAACAACAGTTTCGCCTCTGGTTCGATCCCACCTCGTCGTTCCACA
CCTACTCTATTGTTTGGAATTCTCAACGAATCATGTACGTTACAAAATAAACAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth1	xyloglucan endotransglycosylase (xth1 gene)

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	95	Glyco_hydro_16	133
2	22025	Glyco_hydro_16	130
5	56288	Glyco_hydro_16	128
1.1	101462	Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Concanavalin A-like lectin/glucanase	129
2	118454	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122
5	128954	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122

Preceding Unigenes (1)

Unigene	Build
SGN-U247427	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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