Sol Genomics Network

Unigene SGN-U273459

Unigene Basic Information

Unigene ID:	SGN-U273459
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273459
mRNA sequence:	Length: 2840 bp

>SGN-U273459 Solanum tuberosum #4 (8 members)
ATTCATCATCCATTGATCTGATGGAGAACCAAGTTGACATAGAGAATGATGGAGGGATGATTGAAGAAGAGAAATTTGATTTGGAGAGAA
ATTTTTCAACAATTTCAGAGAGTGGTAGTATAAGAGTGCCTTTGCTCAAATCGAAGAGCAGAGTCAACAATACCTCCCAAATCGCTATTG
TTGGAGCCAATGTTTATCCCATTGAAAGCCTCGACTATGATATTGTAGAAAATGACCTTTTCAAGCAAGACTGGAGATCTAGGAAAAAGG
TTGAGATATTTCAATATATATTTCTCAAATGGACTCTTGTGCTCCTTATTGGATTGAGTACTGGACTTGTTGGTTTCTTTAATAACATAG
GAGTGGAAAATATTGCTGGTTTCAAGCTTCTTCTCACTAGCAACTTAATGCTTGACGGAAAGTATTTCCAGGCATTTGCTGCTTTTGCCG
GTTGCAATGTGTTTTTTGCAACTTGTGCCGCAGCCCTCTGTGCATTTATTGCACCTGCAGCTGCAGGCTCTGGTATACCTGAAGTAAAAG
CATATCTAAATGGTATCGATGCTCATTCCATTTTGGCTCCAAGTACATTACTTGTCAAGATCTTTGGATCCATTTTGGGCGTTTCTGCTG
GATTTGTTGTTGGCAAGGAAGGACCCATGGTCCATACTGGTGCTTGCATAGCAAACTTACTTGGACAGGGGGGTTCCCGAAAGTATCATT
TAACTTGGAAATGGCTAAAATACTTCAAAAACGACCGTGATCGTAGGGATTTGATCACTTGTGGTGCCGCTGCTGGTGTTGCAGCTGCTT
TCCGTGCCCCAGTTGGAGGAGTTCTTTTTGCTCTTGAGGAAATAGCATCATGGTGGCGAAGTGCTTTACTTTGGAGGACTTTCTTCACAA
CTGCCATCGTTGCTATGGTTCTCAGATCTCTCATACAATTCTGTCGCGGTGGGAACTGTGGACTATTTGGGCAAGGAGGTTTGATAATGT
TTGATGTCAATTCAGGAGTATCTAATTACAACACAATAGATGTATTGGCACTTATCTTTATTGGAGTACTTGGAGGTCTTCTGGGAAGCC
TTTATAACTATCTTGTCGACAAGGTCCTTCGAACTTACGCCGTCATTAATGAGAGAGGTCCTGCTTTCAAGATCTTGCTTGTCATGAGTG
TTTCTATCCTGACTTCTTGTTGCTCTTATGGCCTACCATGGTTTGCAGGGTGCATTCCATGTCCTGTAGGCTTGGAGGAAAAGTGCCCAA
CTATAGGTCGCTCTGGAAACTACAAGAATTTCCAGTGTCCAGCAGGGCATTACAATGATCTTGCATCACTCTTTCTGAACACCAATGATG
ATGCCATCCGCAATTTGTTTAGTTCAAATAATTCAAATGAATTTCACATCTCTACTCTTCTAATCTTCTTTGCTGGGGTATATTGCCTTG
GCATTATAACATATGGAATTGCTATTCCTTCTGGACTCTTCATTCCTGTCATACTTGCTGGAGCCTCCTATGGGCGTATTTTTGGTAGAG
CCTTGGGTTCGTTGTCCAATCTTAATGTTGGTCTGTTTTCGCTACTTGGTGCTGCCTCTTTCCTTGGTGGTACCATGAGAATGACAGTAT
CAATATGTGTCATACTCCTTGAGCTTACAAACAATCTACTAATGCTTCCATTGGTGATGCTTGTTCTCCTCATACTCAAGAAACTGTGGC
TGATATTTTTAATAAGGGTGTCTATGACCAGATTGTGAAAATGAAAGGTTTGCCTTTCTTGGAAGCACATGCTGAACCATTTATGAGGAA
TTTGGTATGCCGGAGATGTCTGTTCTGGGCCATTATTGTCATTTTCAGGTGTGGAGAATGTGGGGAACATAGTACATGCTTTGAAGTATA
CTAGGCATAATGGCTTTCCTGTGATTGATGAGCCACCTTTCTCAGAGACACCAGAGTTATGTGGGCTTGTTCTACGGTCACATTTACTTG
TTTTGCTCAATGGAAAGAAATTCACGAAACAACGTGTATTGAGTGCCTCCAATATTTTGAGTAGGTTTCATGCATTTGATTTTGCCAAGC
CAGGATCAGGTAAGGGGCTTAAATTTGAGGATCTCGTCATCACGGAAGAGGAGATGGAAATGTATATTGATCTCCATCCTATAACAAATA
CATCCCCATACACAGTAGTGGAGACCATGTCTCTGGCCAAAGCTGCAATCCTTTTCCGACAACTTGGTCTTAGACACTTATGTGTTGTCC
CAAAGAAAACTGGGAGGGCTCCAATCGTCGGAATCTTAACAAGGCATGACTTCATGCATGAGCATATATCTAACCTCTACCCGCATCTTG
TCCCCCACAAGTAGCCAGAGAAGTTTGCTCGTTCCATAGGCAAATAAGCAGCCTATTGTGCATTACTATTCCTTATTTCTATATTTCCAG
AATCACTTTCATTGTAATTCTTTTGGTTTGATTTTTGTACAAACTACAAGTGCACAGATTTTCTCGTATCAAGCTTGTGGTCTTGCTTAG
GGGTGGAAAATGGGTTGGTTGTGCTGAAGTTGCGGTTCAACTCAGATGGACCAATGTACAACCCTGTCCAAAGCTTGCTTGGGCTAAGAT
GAACTGAGTCATGATGGCTAAACTATGGGTCATAATCCAATCATTTCAATTTGATTTGTTTTTTTTTTCTTTCCTCTTAGAGATATTGCT
CTCTTTGTCTCAATTTATGTGACACCGTTTATGAAAAAAAACTTTTAAAACTTGTGATCTAAAACAAGTTTTAACTTGTGGTTATATATA
ATTTCATGAAAGGTAAGGGGGTGATTATAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
clc1	chloride channel 1	chloride channel

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	631	Cl-channel_volt CBS_domain	29
2	22703	Cl-channel_volt Cl_channelPLT CBS_domain Tat	21
5	56957	Cl-channel_volt Cl_channelPLT CBS_domain Tat	19
1.1	102113	Chloride channel plant CLC - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020) CBS Cl- channel voltage gated - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020)	22
2	119141	CBS Cl- channel voltage gated - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020) Chloride channel plant CLC - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020)	20
5	129614	CBS Cl- channel voltage gated - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020) Chloride channel plant CLC - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020)	18

Preceding Unigenes (3)

Unigene	Build
SGN-U256593	Solanum tuberosum #3
SGN-U262189	Solanum tuberosum #3
SGN-U263492	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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