Sol Genomics Network

Unigene SGN-U272624

Unigene Basic Information

Unigene ID:	SGN-U272624
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272624
mRNA sequence:	Length: 1490 bp

>SGN-U272624 Solanum tuberosum #4 (6 members)
GTCGGATCTCTCACTATAGAAATCTCATCGATGTCAGTCAACTCGTCACTGACTCACAAAATGACGAGTCGAGTCATCCTCCTCCTTTCT
CTAGTTTCTCTTCTCTTCTTCTCCGTCTTACTCACCCCATCCCTCGCCGTCGCCGGCGCTGATGACGACGACGAAGACCTCAGCTTCCTC
GAAACCGACGACGTAAACGATGACGCGCCGGAACACACTTTCCCAACCGACACCTTCTCTGACGACGATGATTTCGATGACGACGGGGAC
TTTGAGAATTACGACGATTTTGAGGTTCCGTCGGCGTTTGATGATGAGAAAGAAGAGGAAGTAGCTAAATTCGACGATAAAGACGTTGTC
GTTTTGACGGATAGGAATTTCAGTGACTTTGTGGAGGATAATAAGTATGTGATGGTGGAGTTTTATGCGCCGTGGTGTGGTCACTGTAAG
GAACTTGCACCGGAGTACGCTGCTGCAGCGACGGAGCTGAAGGCGGAGAATGTGCCGTTGGTTAAAGTTGATGCTACGGTGGAGAATGAG
CTGGCGGAGAATTATGAGGTTCAAGGATTTCCTACTATTTATTTTTTTATTGATGGTGAGCACAAAACTTACAGTGGCCAAAGAACTAAA
AGGGCCAACATTGAGGACTTTGTCTGTTTGTCATGCTTCCTTTAATGGTTTTTGGAATTATTGAACATGGCTGTTTGAAGCAGAGATGCA
ATTGTGACTTGGATCAAAAAGAAGATTGGGCCTGGCATTTACAATATAACAACAACGGAGGATGCAGAGCGTGTACTAACCTCTGGAGAC
AAAGTTGTGTTAGGGTTCCTTGAGTCCTTGGTGGGTCCTGAAACTGAGCAACTTGCTGCTGCTTCAAAACTTGAGGATGATCTTAACTTT
TACCAGACGACAAATCCTAACGTGGCTAAGCTATTCAATATTGAAGACACTGCTAAACGCCCAGCTTTAGTTTTTGCTTAAAAAGGAAGA
GGAGAAAGTGGTGCATTATGATGGTCAATTCACCAAGTCTGCAATAGTTAAGTTTGTATCTGCCAACAAGCTTCCTCTAGTGACAGTTTT
TACTAGAGAAAGTGGAGCTTCAATTTTCTCGAGTCCAATAAAGAAGCAGGTTTTGCTCTTTGCCAGAACAAATGATACAGATAAAGTATT
CCCAACATTTCAAGAAGCTGCAAAACTTTTCAAGGGAAAGCTTATCTTTGTTTTTGTCAACATGGATGATGAAGAAGTGGGAAAACCTGT
ATCAGATTATTTTGGAGCCACTGGAGATTCTCCAAAGGTTATCGGATATACAGGAAATGAGAATCCCAGGAAATACATATTTGATGGAGA
GATCACCGTTGAGAAGCTTAAGGCATTTGGGAGAGGATTTTCTGGGTGACAAGCTCAAAGCTTTTTCATAATCAGACCCTATTTCCTGAG
GATAATGAGGGGAGACGTGAAAGATAGTAGTGGGGGAACAATTTTGATGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	22043	Thioredoxin Thiored Thioredox_dom2 Disulph_isom	98
5	56781	Thioredoxin Thiored Thioredox_dom2 Disulph_isom Calsequestrin Disulphide_isom	23
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129838	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	15

Preceding Unigenes (2)

Unigene	Build
SGN-U256755	Solanum tuberosum #3
SGN-U258836	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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