Sol Genomics Network

Unigene SGN-U272365

Unigene Basic Information

Unigene ID:	SGN-U272365
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272365
mRNA sequence:	Length: 2152 bp

>SGN-U272365 Solanum tuberosum #4 (10 members)
AGTCCAAGAAGCTAAAGGTCTGATCAGGAGCAACCTTTTGGAGACAAATCAAGCTGTAGTATATAGTGAACCTGAGAAAAAAGTCATGTC
GCGATCCGGGGATGAGTGTGTTGTGGCTTTGACTGATCAATGGTATATCACTTATGGAGAATCAGAATGGAGGAAGGCTGCAGAGGAGTG
TTTGGCCAGTATGAATCTCTACTCTGATGAGACACGACATGGCTTTGAGCACACTCTCAGCTGGCTTAATCAGTGGGCTTGTTCTCGCAG
TTTTGGGCTTGGAACTCGTATTCCTTGGGATGAGGAATTCTTAGTCGAATCCTTATCCGATTCCACTATTTATATGGCATATTACACAGT
GGCACACTTCTTGCAGAAAGGGGACATGTATGGTAATGATCATTCTTCAGTGAAACCAGAGCACTTGACAGATGATGTCTGGGAATTCTT
GTTCTGTGATGGGCCTTTTCCTGAAAATTCTTCTATATCTTCTTCTCTTCTAAAGGAGATGAAGCAGGAATTTCTCTACTGGTATCCATT
GGATCTCAGAGTTTCTGGCAAGGATCTTATTCAGAATCATCTTACCTTTTGCATCTATAACCACACTGCCCTCTTCCCTAAGCACCACTG
GCCACGTGGTTTCAGATGCAATGGGCATATAATGCTTAACTCTGAGAAGATGTCCAAGTCCACTGGGAATTTCCGAACACTCCGGCAGGC
AATTGAAGAGTTTTCAGCTGATGCCACACGCTTTTCTCTTGCTGATGCGGGTGATGGGATGGACGATGCTAACTTCGTCTTTGAAACAGC
TAATGCTGCTATCTTACGTCTTACAAAAGAAATGGCATGGATGCAGGAAGTCCTTGATGCAGAGACATCTTTAAGAACTGGGCCTCCATC
CACATATGCTGACCACGTATTTGCTAATGAAATAAATATTGCAGTAAGGACTACAGAGAAGAACTATAGTGAGTATATGTTCCGGGATGC
TCTGAAAACTGGTTTTTATGATCTTCAGGCTGCCAGAGATGAGTATAGGCTTTCCTGTGGTTCAGGAGGCATGAACCGGGATTTGCTATG
GCGATTTATGGATGTTCAAACACGACTTATTACTCCTATCTGTCCACACTATGCTGAATATGCCTGGAGAAAGCTTTTGAAGAAGGATGG
TTATGGCATCAAAGCTGGGTGGCCAGAGGCTGATTTACCGGATCTTAGCCTTAAGAAGGCCAACAAATATTTGCAAGACACGATTGTCTC
GATGAGGAAGCTGCTTCAGAAGCAAGTTTCTGGTTCAAAGAAAGGAAATGCCAATTTGAGTAGCCAAAACAAACCTTCTGTGGGCCTGAT
ATATGTGGATGAGCAGTATAGTGGATGGAAAAAGGAGTGTTTGGGGATCCTGCAGAGGAAATTCGACACTTCAACTGGCTCCTTTGCACC
TGACAAAGAAATCCTCTCCGAATTGCAGAAGAGTGAGATCGGGCAACAAGGCAATTTCAAACAAATACAAAAGCTTTGTATGCCATTCTT
GAGGTTCAAGAAAGACGAAGTAGTGGCTGTTGGGGTTCAAGCATTGGACTTGAAGCTTCCTTTTGGTGAGATTGAAGTCCTTGAGAAGAA
CTCGGAGTTGATCAAGAGACAGCTTGGTCTTGAGACATTGGAGATCTTATCTATGACAGATGATGCTCTAGAGAGAGCAGGGCCTCATGC
TGCAGTTGTGAAGCAGAATCCTCCCTCACCAGGAAATCCAACTGCTATCTTTCTCTGAGTAAACCATTTTTGCCGCATAAGTTATGTGAA
CAGTTTCTTGTTTGAGACCTACATGATGTGATACTCTCTTTCTAGATCTTTTTTTGTCCGTGCATTCTGCGTACATTCTATTACTTGCTG
AAGATCTAGGTCCAAATTAGTGGTTTATTTGCTTCAATCTTGATATGGAGCAACTGCAATTATATCTCCACATTAGTACTCGTTGAGTAG
CAATTTGACAATTCGAACATCTTTGAGTTTACCATTCTACAAGGTTTCCTAGTCGTATCTGCTTTTGATCATTTCTGCTTATAGCTTGAT
TGTCTTTTGATGCTGTATAAGCTGTTCAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	385	tRNA-synt_val tRNA-synt_I tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile	44
2	23916	tRNA-synt_val tRNA-synt_I tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile	10
5	58555	tRNA-synt_val tRNA-synt_I tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile	8
1.1	101679	tRNA synthetase valyl/leucyl anticodon-binding Aminoacyl-tRNA synthetase class 1a anticodon-binding	47
2	120282	Leucyl-tRNA synthetase archae/euk cytosolic class Ia - Molecular Function: leucine-tRNA ligase activity (GO:0004823) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: protein biosynthesis (GO:0006412) Aminoacyl-tRNA synthetase class I - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	9
5	131148	Leucyl-tRNA synthetase archae/euk cytosolic class Ia - Molecular Function: leucine-tRNA ligase activity (GO:0004823) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: protein biosynthesis (GO:0006412) Aminoacyl-tRNA synthetase class I - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	7

Preceding Unigenes (1)

Unigene	Build
SGN-U247441	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: