Sol Genomics Network

Unigene SGN-U272356

Unigene Basic Information

Unigene ID:	SGN-U272356
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272356
mRNA sequence:	Length: 1646 bp

>SGN-U272356 Solanum tuberosum #4 (10 members)
CTAGCACATTATCAGTCACAGAAAGAGATTGATATTCTATTGTGTTTGGATTGCTTCCATGAGGGTAGGTTTATTGCTGGTCACTCTAGC
TTGGATTTTGTCAAAGTGAGCTCTATGAAAGATTATGGAGATCTAGATGGAGATACTTGGACTGACCAGGAAACACTATTGCTTCTCGAG
GGAATGCAACTCTACAATGAAAACTGGAATCAAATTGCAGAACATGTTGGCACCAAGTCAAAGGCACAGTGCATCCTTCATTTTGTCCGC
CTGCCTTTGAATGGTGCCTCATTAGATAATATTGAACTTCCAGGTGCATCTGGTGCCTCTAGTTCTAACACAGGTGAAGATCGTAATAAA
TCCCATTCAACTTTGAATGGGAATCTTGCAGGACCAAGCACTGGAAACCTTGATTCTGATAGCAAATTTCCATTTGAGAACTGTGGAAAT
CCAGTAATGTCCCTGGTTGCTTTTCTGGCATCTGCTGTTGGACCGAGAGTTGCTGCAGCATGTGCCCATGCATCCTTGGCAGCTTTATCC
AAGGATGATACTTTAACTGCACCACGGAACATGACTCAGATGGATGGATCCACAACAAATAATGGGACCAGTGTAGGAAGAATGCCTGGA
AAGAATGGAAGTCCTCATGGAGATGTTGGAAGTTCGTATCAGCTAAAAGATGAAAAGGCAGGAGGACAAGGTCCATGGGGTCAACATGAT
ACTGGAGGTGCTCCATTATCCACTGAAAGTGTAAGAGCTGCTGCTAAAGTTGGTCTTGCAGCTGCAGCTATAAAATCAAAGCTTTTTGCT
GACCATGAAGAACGTGAGATTCAGCGGTTATCTGCAAACATAGTCAACCATCAGTTGAAGAGGTTAGAGCTGAAGCTGAAGCAGTTCGCT
GAGGTGGAGACCTTGTTAATGAAAGAATGTGAACAATTGGAGAGAACAAGGCAACGCTTTTTTGGAGAACGTGCTCGGATGATGACAACT
CAACCTGGTTCGGTTCGTGTATCCCGACCAATGGGTGTGTCTGGTGCTGGTGCAGCAGTGGTCAGTAATACAGGAAATAGTAGGCAACAA
GTTTCAGGTCCTCCACAACAAAATTTTATTGCTGGATATGGGAACAACCAACCAATGCACCCTCAAATGTCATTTATGCAGCAACAAGGA
ATTTATGGATTTGGGCCTCGGCTGCCACTCTCAGCGATACACCCATCCTCTTCAACACCCGGCGAGAGAACAAGTTGCATTGCTCTGTCA
GACGGATTGAGACATTAATGAAGCCAATCGACTGAAGATGCAGCTCGGACTGACAGTGCAATGGCCTGATTACCCAAGCAGGACTGCTCA
CATTAGTTGCTGCTTTATGCAGCTAAACTTATTCGTAGAAACAACTTGTACTATATTTCGGTTTCTACTGTGACATAACACTCTTTTGGT
AACAACAAGTATGAGACTAGGGATCTAGAAATGTAGTTTTGTGCAGTACAGGTAATTGAGATGGAGAAAACAGGGCAATGGAGTATGGCA
GTTTCTTGATCATAGAAGTCGTGTAACAAAATTGTTGTGCTGATTCCTACATTTGTAACTGATTTCTCAAGTAATTTAACTAAGCTTTGA
GGGTTAAACCAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	369	Myb_DNA_binding SWIRM	46
2	27387	Myb_DNA_binding Myb_SHAQKYF Squash SWIRM DUF465	4
5	62893		3
1.1	101735	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) SWIRM	42
2	123014	SWIRM Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449)	4
5	136066		3

Preceding Unigenes (1)

Unigene	Build
SGN-U247515	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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