Sol Genomics Network

Unigene SGN-U271180

Unigene Basic Information

Unigene ID:	SGN-U271180
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271180
mRNA sequence:	Length: 1406 bp

>SGN-U271180 Solanum tuberosum #4 (12 members)
ATTTTTTCAGTTCAAAAGCATATTTCTAACTACTTTTCTAGCGTGGTGAAATAGATAGACGTTCAATTGTACGGCCATAATGGCACAGTA
TAACAATAATTTAACCGTCGATCCAAAATCCGGCTATTCTCCGGCGAACTCAACTTTCTACAGCAAACGTAAACCGATTCCGTTTCCGGC
GAATGAATCTCTTGATGTAACCACTTTCATTTCTTCACGAGCACATAGTGGGAAAATCGCTTTCATCGACGCTACGACTGGTCGGAAACT
CACTTTCTCCGACGTCTGGAACGCCGTTGAATCCTTAGCTACCAGTCTATCCGTTGATATGAGTATTCGTAAAGGTGACGTTGTTCTTCT
CCTTTCTCCTAATTCCATCTTCTTCCCCATTATTTGCCTCGCCGTAATGTCACTCGGAGCTATAATCACTACAACAAATCCACTCAACAC
GAACAACGAAATCGCTAAACAGATCAAGGATTCAAACCCTGTTCTCGCCTTTACAATTCCTCAACTCCTCCCGAAACTCACCGGATCTAA
TCTCCCGGTGATTCTAATCGACGGAGTGAATGATTCAAATTCAAATCTCAAAATCGTTGGGGATTTACAAAAAATGATTCAGAGAAAACA
CAGTGAAAGCAGATTGAAAGAGCGAGTTACACAAAACGACATAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGT
TATTTCGTCTCACAAAAACTTAATCGCCATGGTTCAAACTATAGTCGGTCGATTCAATCTAGACGAAGGTGTACAAACCTTCATTTGTAC
TGTACCTATGTTTCATATTTACGGATTAGCAGCTTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTACTATCAAAATTCGA
AATGAATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTTAATAACGC
TGATTTGATTAAGGAAAAATATGATTTGAGCAGCTTGGCGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATT
TGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACGGAGTCGACCGGAATTGGGGCGTCGACGGATTCTTTGGAGGA
GAGCCGGAGATATGGAACGGCGGGAATGTTGTCGCCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGGAAGGCTTTGCCGGTGAA
TAATACCGGTGAGCTTTGGCTAAGAGGGCCTACCATTATGAAAGGTATGACTCTTTACGAGCATAATATATAAATATGTCATTTAACTTA
CGTATTTTAACTTGTAGATACATATATCTTATGTGAAATAATAATATCGTGTAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	22053	AMP-bind	93
5	56359	AMP-bind	60
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	118495	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	81
5	129062	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	50

Preceding Unigenes (1)

Unigene	Build
SGN-U245746	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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