Sol Genomics Network

Unigene SGN-U271061

Unigene Basic Information

Unigene ID:	SGN-U271061
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271061
mRNA sequence:	Length: 1266 bp

>SGN-U271061 Solanum tuberosum #4 (15 members)
CTATATATTCATTTCAAATACAATCTTGAACCTTTGCCGGTTTTGCTCCAATTTCAAGGTGTTGTTCCTTCCCCAATTCACAGAGAATTG
AAATTGGTGAATTTGATATGGCTGGTAAGATTATGCATGCTGTTCAATACGACTCTTATGGCGGTGGAGCTGCTGGCTTGAAGCATGTGG
AAGTTCCTGTGCCTACTCCGAAGAAGGATGAAGTCTTGGTAAAAGTGGAGGCTACAAGCATAAATCCTCTTGACTGTAAAATTCAGAAGG
GCATGTTTCGTCCACTTCTTCCTCCCAAGTTTCCTTTTATTCCTGCTACCGACGTGGCGGGAGAGGTTGTTGAGGTAGGATCTAATGTAA
AAAGTTTCAAGGCTGGTGACAAGGTTGTGGCTATGCTCAATACCCTGAATGGAGGTGGCTTGGCTGAATATGCGGTACCTAAGGAGAGTT
TGACTGTTTCAAGACCCGCTGAAGTATCAGCTGCAGAAGGTGCAGGTCTTCTTATTGCAGGTCTTACAGCTCTTCAGGCCCTTGTAAATC
CTGCTGAGGTTAAGCTCGATGGAACTGGACCCCGGAAGAACATTCTAGTTACGGCTGCCTCGGGTGGTGTCGGTCACTATGCTGTTCAAT
TGGCAAAACTTGGTAACGCCCATGTTACTGCCACCTGTGGAGCCCGCAACTTTGATTTTGTGAAGAGCTTAGGAGCAGATGAGATTCTTG
ATTACAAGACTCCAGAGGGAGCAGCTCTTAAGAGTCCATCAGGCCAAAAGTATGATGCAGTGATTAACTGCACAACAGGCATCCCTTGGT
CTACGTTTGAGCCTAATTTAAGTTCGAGTGGAAAGGTCATTGATCTAACTCCTGGAGCTAGCTCCATGTGGACCTTTGCAGTAAAGAAAT
TAACCTTCTCAAAGAAGCAGTTGGTGCCATTTCTAATAAATGCCAAGAAGGAAAACCTGGAATTGCTTGTTAGGCTTGTGAAGGAAGGGA
AACTCAAAACAGTGATCGACTCCAAATTTCCTCTGAGCAAGGCTGAAGATGCTTGGAGCAGGAGTATCGATGGACATGCGACGGGAAAGA
TTTTTGTGGAGCCATAGAGTAGTGGTCTACCATATTATGTTATTATACATACATGTGTAATAAAAGATTTGTGAGGCTTGTGCATTATGA
CCAGTTAAATTTATTCAGCTGTAACAACTTTTATTTGCCTTGTATGCATATGCAGTTGTCAAAAAAAAAAAAAAAAAAAACTCGAGGGGG
GGCCCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ207849	DQ207849 ripening regulated protein

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	115	Adh_zn_family	112
2	22527	Tdh Adh_zn_family BchB	26
5	57168	Tdh Adh_zn_family BchB	16
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118870	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	27
5	129620	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	18

Preceding Unigenes (2)

Unigene	Build
SGN-U244983	Solanum tuberosum #3
SGN-U259703	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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