Sol Genomics Network

Unigene SGN-U270904

Unigene Basic Information

Unigene ID:	SGN-U270904
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270904
mRNA sequence:	Length: 1730 bp

>SGN-U270904 Solanum tuberosum #4 (17 members)
CTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTCTCCAAAAGGAAGCCGTCAACTAACCCCTCCAACTCTCCATCACCAATCTT
TCCCAGTCTATAAAGCTCTAATCAAAGTTCCCCATCTTTCTTAATCAAACAGTTCAATTTCTTGATTCAATAATCTAAAACCCCAAAACC
AAAAATCCCTAAAAAGAACCAATTCTTGAACCATTTGGTTTTTGTAGAATCAAGAAAAGGCAGAAAAAGGGGAATAAAAAACCAATCTTG
AAAAGCAAAAAAAAATGGATACTAAGCTCTTAACAAGTAATTTGGTGTTGTTTTCATCAATCTTGTTAACTCTATTTACTTTTTCATATG
GTCAAAATTGTTCAACTCATCAATTCACAAACAACAATCTTTTTTCCACTTGTAACCCTCTCCCTGTTCTCAACTCTTTTCTTCACTGGA
CTTACCACCCTGATAATCACACAGTAGATCTTGCTTATAGACATGGTGGTGTTACAGAATCTTCTTGGGTAGCTTGGGCTTTGAATCCTG
ATGGTGCAAGAATGGTAGGATGTCAAAGTTTGATTGCTTTTAGAAATTCTAGTGGGCAAATTCATGCTTACACTTCACCTATTACTGATT
ACAATACTGACTTGTCAGAGGGTGCTTTGAGTTTTGGTGTGCCTAGAATTTCAGCAGAGTTTGTAGGGAGTGAGATGATTATTTTTGCCA
CTTTAGAGCTTCCTACTAATAGGACTAGTTTTACTCAGGTGTGGCAAAATGGTCCAGTTTCTGGACAAGCTTTACAAGTACATCAAACAA
GTGGTGATAACATAAGGAGTGTTGGAACTGTGGATTTTGCTAGTGGACAGACCTCAGCTGGTGCTGGTGGAGGTATATCAGCTAGTGCTA
GACAACGTCGAAGAAACATTCATGGAGTGCTAAATGCAGTTAGTTGGGGTGTTTTGATGCCAATGGGTGCTATATTTGCAAGGTATTTGA
AAGTGTTCAAGTCAGCTAATCCAGCTTGGTTTTATCTACATGCTGGTTGTCAAACTGTTGCTTATGCTGTTGGTGTTGCTGGATGGGGCA
CTGGTCTCAAACTTGGTAGTGATTCTGTTGGAATTAGATTTGACACTCACAGAAACATTGGAATCACTCTCTTCTGCCTTGGAACTCTTC
AGGTTTTTGCTTTGCTACTGAGGCCAAAGCCAGACCACAAGTTCAGACTCTACTGGAACATCTACCACCATGTTACTGGATACACTGTGA
TCATTCTCAGCATCATCAATGTATTTGAAGGATTTGATGCTTTAAATGGACAGAAAAACTGGAAAAAGGCTTACATTGGAGTGATCATAT
TCTTGGGAGCCATTGCTGTTCTATTGGAAGCCATTACTTGGTTCATTGTCATTAAAAGGAAAAAAACATCAGTCTCTGACAAATCTCCTC
ATGGCAATGGCACTAATGGATATGCCAGCAGGTCTCATGACCAGACCGCGTAAATAAATATGTGTTCTCTCTAATAATAAATCATACTAC
ATAGTTATCGAATTCTTTATAGATAATGAGGCATGTTTATGTATGTTTTAGTTGAGATTGATATTAATCTATGATGTTTAGCATCAGATT
TTTGGATATTTGATTGCTAGATTTAGATTCTCTTGTTTGTAATTTGTTCTTGTATAATATATACATGGTGAGTACCACTTATAACTAGTT
TAATTTATCGTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
poni2	AJ309300 membrane protein 2

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	271	Cyt_b561_fer_ox	57
2	22301	DUF568	36
5	56506	DUF568	35
1.1	101648	Cytochrome b561 / ferric reductase transmembrane	52
2	118752	Protein of unknown function DUF568 DOMON-like DOMON related - Molecular Function: dopamine beta-monooxygenase activity (GO:0004500) - Biological Process: catecholamine metabolism (GO:0006584)	32
5	129195	Protein of unknown function DUF568 DOMON-like DOMON related - Molecular Function: dopamine beta-monooxygenase activity (GO:0004500) - Biological Process: catecholamine metabolism (GO:0006584)	32

Preceding Unigenes (1)

Unigene	Build
SGN-U246254	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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