Sol Genomics Network

Unigene SGN-U270403

Unigene Basic Information

Unigene ID:	SGN-U270403
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270403
mRNA sequence:	Length: 1813 bp

>SGN-U270403 Solanum tuberosum #4 (20 members)
CCTGACTCCACTTATCAAAAAACAGTAGAAAATCCTCCTAAACCCCCAAAAATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGC
GATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTC
ATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAG
CGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAG
GACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAA
CCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCGAATCCGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCAGAGTTTTGGTTCGGAG
GATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGTCTCCGACTGCGGGGGCTGTTCCACAGCAG
GTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAGGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAATGCTGAGCAAGTTGTT
AAGGAACCGGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTG
CATCTAGAAGAGCAACAAAATATGTATCGTCGGAAAAGCGACGATAATCTGGCAGCGGCTTTCCCCGGAGGTGACTATTATGTTCAGAGG
GGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTCCCCGGGAGGAGT
ACTGCCGTCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCCACCGGAGCATATCACCCACACCAGCACCAACA
CCAACACCAGCACCCTCAATTTGTCAGGCCAATGGCCGGACCACCGGGACAAGGGTACTACGCCGTTCAGAGGATGCCACAGGAGCCGTA
CAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTGCCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGG
ACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGGAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGATA
CACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATGGCGCCACCACAACAACAACCGCA
GTACCACGCAATGCCGCCGCAAGCGGTGGTTAGCTCCGATATGAGAACTCAAGAAGCTGCTAAAGTAGTACCTGTCAAACCTACATAAAC
ATCAGTGTGATTCTTGAAGCTGTTTAATGAAAGGTATATGAACTTTCATATAAAAATAATAAAATAAAAGTAGTAGGGCATGAGTTTATA
GTATAATTCTGTTTATGATCTTGAGAAGATTATGTGCCATGTTCATGTGTACATTTTGAGTGGAGATTGAGTTTCATTATTCTATGCTTC
TTCAAGATTATATGTTCCTTTATATATCATGCAATGCATTTTGTGATTTTCCATTTTTTCACTTGAAGAAAAAGGATAGGATGAGTTTAA
AAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	227	OPR_PB1	66
2	22208	OPR_PB1	45
5	57148	OPR_PB1	16
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118730	Octicosapeptide/Phox/Bem1p	33
5	129736	Octicosapeptide/Phox/Bem1p	16

Preceding Unigenes (2)

Unigene	Build
SGN-U245575	Solanum tuberosum #3
SGN-U258281	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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