Sol Genomics Network

Unigene SGN-U270318

Unigene Basic Information

Unigene ID:	SGN-U270318
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270318
mRNA sequence:	Length: 1711 bp

>SGN-U270318 Solanum tuberosum #4 (21 members)
TTTTTTTTTTTTTTTTTTTTTTTTTTAGGCTCCATATATATTTAAATTTCAATTTAACCTTGTTAATATAACGTAAGAGTATGTAATTAT
TTATATAATATAACACATCATTATTCTTCCAATTAAACGTTCAGAAAAAGATGAAAATAAAAACATAGCATTAATTAGACCCCAAATAGC
TCCTTTTCCCCAAATACAAGTTTTTACTAAAGCTCGGAACAATCCATGCGCTCAGAGATAGGGAAGCTAAGGTGAATATTGCATATTGAA
TAAAGCCGTCCAATCCGAGACTGAAGATAAGGAGGATGATAATGATTATTGCTGAAGTCTTCGATGCATGAACAATATCTACGAACCCCA
TCTTCGTCGTATTTTACGTTGTTATTCAATATCATTAAGTTACTACAACATTCCCAAGTTGCATATTCAGTAATTCCATCTACAAAATCT
TCACAAGATGCAAAACAAGCATCCACATCGTCACAAATTGGATCTTTTTTATAGACTCTGAATGCATTGCATGAACTTAAAACAATCAGT
GCAACAAAAAATAGTAGTAAACTTTTGGTTGTCATTTTTTTGAGAGGCAGAGGAGAGCGCAACAGTGAAATCAACAAAAAATGAAGTACA
ATCCTAGAGTATCCTCCTCCCGCCGGAAGAGCAGGAAGGCTCATTTCACGGCGCCGTCAAGTGCGCGCCGGATTTTAATGAGCGCACCCT
TATCGTCCGAGTTACGTGTAAAGTACAACGTAAGATCTATGCCGGTGAGGAAAGACGACGAAGTTCAGGTTGTTCGTGGAACTTACAAGG
GCCGTGACGGGAAGGTCGTCCAAGTGTACCGTAAGAAATGGGTGATCCACATTGAACGTATAACCAGGGAGAAGGTTAATGGATCTACTG
TGAACGTTGGTATTCATCCTTCGAAGGTTGTTGTTACAAAGCTCAGGCTTGACAAAGACAGGAGATCACTACTCGACCGCAAGGCTAAGG
GACGCGCTGCTGCTGACAAGGACAAGGGCACTAAGTTCACTTCTGAGGAGATCATGCAGACAATCGATTGATTTTTCACTCATTTTGTCT
GGTATTGCTATTTTAGCTAAAGAGAATTTATAGCCGTCCGTTTCAGTTAATTAGTGTTTTGTGGAGACATTGAATTTTGTTGAAGTTTCT
GTTTTTGCTTAAATCAATGATGATGATACTTCAGAAAAAAAAAAAAAAGTTAAATTATTATGTTAGCTACTAAAAAAAGAACTGGGAAGA
TCCCTGACAAGGAGATTCTCAACATTGTGAAGGAGAGCTTTGATTTCAGGCCCGGAATGATTTCCATTAACCTCGATTTACTGAGGGGTG
GCAACGGCCGATTCTTGAAGACTGCTGCCTATGGGCATTTTGGTAGAGATGATCCTGACTTCACATGGGAAGTAGTCAAGCCTCTCAAGT
GGGACAAACCTCAAGCTTAAACTGGAATATAATTGTTTCATCCCTTATGTGTCAAAGCTTACTATAGCCTGCATGTTGGCTTTTGTTTCG
CCTTTTCTTTTTATTTTTTACATCTTATATTTGTTCTTTTAATGTGGTTTTAGAAATATTGTTCTAAGTTTCTTGGATAAGATAAAGTTT
GAGGAATATGAAATCATGGATTGAGATATTAAATCTTGCCTTTTGTTATGTGTTTCTGTAAACATGGTAGAACTTTTCGACTAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	216	S-AdoMet_synt	69
2	23089	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
5	57177	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	119270	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18
5	129617	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18

Preceding Unigenes (2)

Unigene	Build
SGN-U244327	Solanum tuberosum #3
SGN-U247074	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: