Sol Genomics Network

Unigene SGN-U270258

Unigene Basic Information

Unigene ID:	SGN-U270258
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270258
mRNA sequence:	Length: 713 bp

>SGN-U270258 Solanum tuberosum #4 (22 members)
CGCATTTACAGAGAAAAAGTGCGTGTGAGAATCCGTTTCTGCAACAATGAAGTACAATCCAAGAGTTTCCTCCTCTCGCCGTAAGAGCAG
AAAGGCCCATTTCACTGCTCCATCAAGCGTTCGCAGGGTGTTGATGAGCGCACCCCTTTCATCTGAGTTACGTACCAAGTACAACGTCAG
ATCTATCCCGGTGAGAAAAGACGATGAAGTTCAAGTAGTAAGAGGAACCTACAAGGGCCGTGAAGGAAAAGTTATGCAAGTGTACCGTAA
GAAATGGGTGATTCACATTGAGCGTATAACTAGAGAGAAGGTTAATGGATCTACTGTTAATGTTGGTATTAATCCATCTAAGGTTGTTGT
TACCAAACTCAGACTCGATAAGGATCGCAAGTCTTTGTTGGATCGTAAGGCTAAGGGACGTGCTGCTGCTGATAAGGATAAGGGTACAAA
GTTCACTGCCGAGGAGGTCATGCAGACTATTGATTAGATTTAAAGTCATCTTTCTTCTATCTCTGCTGAAGAGAGGTTATATCAGTACGT
TTTTGGTTTATTAGGGTTTTTGAGATCTCTGAATTTTTGGGTTTATTTAATGTTAATTGAATGTTGCTGAAAGTTGTTAATTTTGGGTTG
ATCAATATAACTCAAGTTAAAGATTTTAACTTGTGTGCCGTTGGGTTAAATAGGTTCTTTCTGCTAGAATGATTGCTTCAACC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	216	S-AdoMet_synt	69
2	23089	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
5	57177	KOW Ribosomal_L24 Ribosomal_L24_26 Ribosomal_L26e/a	16
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	119270	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18
5	129617	Ribosomal protein L24/L26 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) KOW Ribosomal protein L26 eukaryotic and archaeal form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) Translation protein SH3-like KOW (Kyrpides Ouzounis Woese) motif	18

Preceding Unigenes (1)

Unigene	Build
SGN-U245045	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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