Sol Genomics Network

Unigene SGN-U270205

Unigene Basic Information

Unigene ID:	SGN-U270205
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270205
mRNA sequence:	Length: 1010 bp

>SGN-U270205 Solanum tuberosum #4 (22 members)
CTAATCTCAATATTGAAAATTATCATCTTTCTTATTAGTTTTTCTAAATTCTGAAATAATGGCAGTTTCAGCTACTACTACTCTTATGAC
TCCATTGAAAACTTCATCGTTATCTTTTTCTTCTGTTTCAAATGTTGTTTTTCCTAAGAAACAATACTTTAAACTTTGTGCAACATCTGA
TGTTTCACTTACTGGTGTGGTGTTTGAGCCATTTGATGAAGTTAACAAGGATGAATTTATGGTTCCTATCACACCACACACTTCACTTGC
TCGACAGAGGTACGCGGACGAATGTGAAGGTGCTATCAATGAGCAGATCAATGTGGAGTACAACATTTCGTATGTATACCACGCCATGTT
CGCCTACTTTGACAGGGACAACGTAGCTCTAAAAGGCCTCGCAAAATTCTTCAAGGAGTCAAGTGAAGAAGAAAAGGAACATGCTGAGAA
GTTAATGCATTATCAGAACATCCGAGGAGGAAGAGTGAAGCTACATTCTATTATGATGCCTCCCTCTGAATTTGATCATGTTGATAAGGG
AGACGCGTTGTATGCAATGGAACTGGCATTGTCCTTGGAGAAGTTAACAAAGGAGAAACTTTTGACCCTGCATAGCGTGGCTGATCGAAA
CAATGACTCCGAAATGCAAGATTTTGTTGAACGCGAATTTTTGGCCGAGCAGGTTGAGGCTATTAAGAAAATTGCAGAATATGTAAGTCA
GCTAAGGAGGGTTGGAAAAGGACATGGAGTGTGGCACTTTGATCAGATGCTTTTACATTAATATACATAATGGTGCAGCTTGAAGGTCCC
CCAGTTCAGGCTCCTTTTATCTTAGATTGTAAGTCTTTACTATATATGTTGTTGTCCAATAATGTAATACATATTTATGTTACTTCAAAT
TCAAGTCATGTATAGGCTTGATCCTAGAGGATTAATATGTCAGCTTGCTTTCAAGAAATAAAAGTTGTTTGATGAGGAATTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF133814	ferritin 1

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	729	Ferritin_like	26
2	22815	Ferritin_like Ferritin Ferritin_Dps	19
5	56960	Ferritin_like Ferritin Ferritin_Dps	19
1.1	102006	Ferritin-like Ferritin-related Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin/ribonucleotide reductase-like Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199)	25
2	119261	Ferritin-like Ferritin/ribonucleotide reductase-like Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin-related	18
5	129604	Ferritin-like Ferritin/ribonucleotide reductase-like Ferritin - Molecular Function: binding (GO:0005488) - Biological Process: iron ion transport (GO:0006826) - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin and Dps - Biological Process: iron ion homeostasis (GO:0006879) - Molecular Function: ferric iron binding (GO:0008199) Ferritin-related	18

Preceding Unigenes (1)

Unigene	Build
SGN-U245426	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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