Sol Genomics Network

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Unigene SGN-U270122

Unigene Basic Information

Unigene ID:	SGN-U270122
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270122
mRNA sequence:	Length: 1498 bp

>SGN-U270122 Solanum tuberosum #4 (20 members)
TGATAACCTTTTTGCCCAAATGTACTCCATCGACGGCTCTCTCTGTTGTTAGGGTTTATCACTGGGGTTTCGGAGTAAGCTGTTGCCAAT
GGCGAAACCAGGTCGAGGCCGTGCGGCTTCACCTTCAGGCTCGTCTTCTCGTTCTCGTTCCCGGTCTCGCTCTTACACTCCTTCAAACTC
TCGCTCCTCAAGTTCTCGATCTAGATCCCGCTCCAGATCAATTTCTTCATCTTCCTCTGCTTCCCGCAGTGCAAGTTCTCGCAGCCCTAG
TCGTCTCCCTCCTTCTCAGCGAAAAAGCCCTGCTGGAGTATCTAAGCGAGGCCGCTCGCCGCCACCACCACCAGAGTCTAAGAAAGCTTC
TCCACCTCCAAGGAAAGTATCTCCTATACCTGAGTCACGTGTGATTCATGTGGATCAGCTCAGCAGGAATGTCAATGAAAACCATTTGAA
AGAAATATTTGGTAATTTTGGTGAAATTCTGCATGTGCAGTTGGCCATTGATCATGTTGTTAATCTTCCCAAAGGGTTTGCTTATGTTGA
GTTCAAGACTAGAATTGATGCTGAGAAAGCCCAACTACACATGGATGGTGCACAGATTGATGGGAAAGTAGTTCATGCCAGGTTTACCCT
GCCTGAGCGAAAGAAGGCTGCCTCACCTCCAAGGGCTGTTGCAACTTCCTCAAGAAGAGATGCTCCAAGAACTGATAATGCCCCTGTTGA
TGTGGAGAAAGATGGACCAAAACGGCAACAAGACTTATCTCCTCGTCGAAAACCTGCCTCTCCACCTCGGAGGTCTCCTATAGGACGAAG
AGGATCTCCTAGACGTGGGCCAGATTCTCCAGTTCGCCGTCGAGCAAATTCTCCTTTTAGGCGCGGCAGTCCACCTCCCCAAAGGAGGAG
GCCTGCATCTCCCATGAGACGCCGTTCACCATCGCCTCCACTAAGACGTCATCGGACACCTCCTAGGGGCTCTCCCAGAAGAATTCGTGG
CAGTCCTGTTCGAAGACGTTCTCCCCTTCCACCAAGGCGACGTTCTCCACGACGTGCTAGAAGTCCACCCAGAAGATCTCCGATTGGTCG
TCGGTCTAGCCGTTCACCTATTAGAAGGCCTATCCGGTCACGATCAAGATCCATCTCTCCTAGGCGGGGAAGGGGTCCAGCTGCAAGACG
TGGGAGGTCATCATCCTACTCTTCTTCTCCCAGTCCTCGCAAGGGACCCCGCAAGATTTCAAAGAGTCGCAGTCCTAAGAGAAGGCCTTT
AAGAGGGAGGAGCCCCAGCAACAGTAACAGCAGCAGTTCGCCGCCTCGCAAGCCCTAGTTTGTTGCTCTTGTAAGGAATCCGTGACATGG
ACGCTCCCTTAACGGTTGAGCTTTGTAATCTTTAATTCTGTGGAGAAAGGAGTCATTAGACAAACCTGCACTCACTTGATTGCTTCATTT
GAACGTATGAATTGTGAATGTTTTATGATTGTATACTGATGTCCAATTCACATTATTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ252499	arginine/serine-rich protein

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	24113	RNA_rec_mot AT_hook	9
5	60030		5
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	121421	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6
5	132282	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U244740	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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