Sol Genomics Network

Unigene SGN-U269994

Unigene Basic Information

Unigene ID:	SGN-U269994
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269994
mRNA sequence:	Length: 1648 bp

>SGN-U269994 Solanum tuberosum #4 (25 members)
AAAAAAGGCATAAAGAAAGAGTCGAGTAGTTTCTTCTTCTTCTTCTACAATCCAGATCGATCGATTATCATCATCAGAAGAAGAATAATT
TTGTTGAAATGAGAGAAATAATAAGCGTACACATAGGTCAAGCTGGTATTCAGGTGGGAAACTCATGTTGGGAGCTTTATTGCCTTGAAC
ATGGAATCCAGCCTGATGGCATGATGCCTAGTGACACCTCACCAGGTGCAGCGCATGATGCTTTCAACACCTTCTTTAGCGAAACCGGTG
CTGGGAAGCATGTCCCAAGAGCTATATTTGTTGATCTTGAACCTACTGTTATTGATGAGGTGAGAACTGGCACTTATCGCCAGCTTTTCC
ATCCCGAACAGCTCATTTCAGGAAAGGAAGATGCTGCAAATAATTTTGCCAGAGGCCATTATACAGTTGGGAAGGAGATTGTCGATCTTT
GCCTTGATCGAGTAAGGAAATTGGCTGATAACTGCACAGGTTTGCAGGGATTCTTGGTGTTTAATGCTGTTGGTGGGGGTACTGGTTCCG
GATTGGGGTCATTGTTGCTGGAACGCCTATCTGTGGATTATGGAAAAAAGTCAAAGCTTGGGTTTACTATCTATCCTTCTCCCCAGGTAT
CCACTGCTGTTGTAGAGCCTTATAACAGTGTTCTTTCAACTCATTCCCTTCTAGAACACACTGATGTGGTTGTGATGTTGGACAATGAAG
CCATTTATGATATCTGTAGGAGATCCCTAGACATTGAGAGGCCTACATACACTAATTTGAACCGACTGATTTCACAAATCATATCATCGT
TGACCACTTCCTTGCGGTTTGATGGAGCCATCAATGTAGACATTACTGAATTCCAGACAAACCTGGTACCATATCCACGCATCCATTTTA
TGCTTTCATCATATGCCCCTGTGATCTCAGCTGAAAAGGCATACCATGAGCAATTATCTGTACCTGAGATAACAAATGCAGTTTTTGAGC
CCTCAAGCATGATGGCTAAATGTGACCCAAGGCATGGAAAATATATGGCTTGCTGCCTGATGTACCGTGGAGATGTTGTTCCCAAGGATG
TCAATGCTGCTGTCGCTACTATTAAAACGAAGAGGACGGTTCAGTTTGTTGACTGGTGCCCAACTGGCTTCAAATGTGGAATAAACTATC
AGCCTCCAACAGTGGTACCTGGGGGGGATCTTGCCAAGGTGCAACGAGCTGTTTGCATGATCAGTAACAATACTGCAGTTGCTGAGGTGT
TCTCGCGCATTGACCACAAATTTGATCTCATGTATGCTAAGAGGGCATTCGTCCACTGGTATGTTGGAGAAGGCATGGAAGAGGGAGAGT
TTTCTGAAGCTCGTGAAGATTTAGCTGCACTTGAAAAAGATTACGAGGAAGTTGGTGCTGAAGGAGTTGATGATGAGGAAGACGGTGACG
AATATTGATGTAGACCAACATCTTTGAAGGCAATGTTGGCCTGGTGCCTTGCATATGTTTTTGTTGTTATTTGCTATTTGTATAACTTCC
TATATCAGTTATTGTTTACATTGTAATTTGACATTCCTTTGCATTCTTGTCTGAATATTTCCAACTACAGTGATTGTCTACATTGTAATT
TGACATTCACTTCTTCTATAGTGATTGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ294259	tubulin alpha-5 chain	tubulin alpha-5 chain

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	68	Tubulin_FtsZ Tubulin Tub_FtsZ_C	172
2	22017	Tubulin_FtsZ Tubulin Tub_FtsZ_C	143
5	56367	Alpha_tubulin Tubulin_FtsZ Tubulin AroFGH Tub_FtsZ_C	58
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	129035	Alpha tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	55

Preceding Unigenes (1)

Unigene	Build
SGN-U245530	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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