Sol Genomics Network

Unigene SGN-U269901

Unigene Basic Information

Unigene ID:	SGN-U269901
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269901
mRNA sequence:	Length: 1797 bp

>SGN-U269901 Solanum tuberosum #4 (27 members)
TTTTTTTTCTCTAAAAACGTTTGTACATACTGTTGTTTGGATACTGGCTTTGGAAGGCAAACACATAAACCCTGCGCCGCCGCCGCCTTC
GACTTCGACTAGCACATCTCCGTTGTGTAAGTTTCAGAGAAGATGTTGGACATAAATCTGTTCAGAGAAGACAAGGGACACAATCCCGAA
ATCATTCGTGAATCTCAGCGTCGTCGGTTTGCTGATGTCGATCTTGTCGATCAGGTCATCCAACTTGACAAAGAATGGCGTCAGCGCCAG
TTTGAGGTTGATAACTTGCGGAAAGATTTCAACAAGATCAACAAAGAAGTTGCCAAGCTCAAAATTTCTGGTGAGGATGCAAGTCAAAAA
ATTAAGGACACTGCAGAGAACAAGCAACTAACTGCAAAGAAAGAGGCAGAAGTACAAGAGGCTCGAGCCGCTTTATATTCAAAGCTGGAA
ATCATTGGTAACCTTGTACATGATTCAGTACCAGTTAGTAATGATGAGGCAAATAATGCTGTAGTTCGAACATGGGGAGAGAGGCGGACT
GAGAAGGGTCTTAAAAACCATGTTGATCTCGTGGAAGCTCTTGGAATTGCAGACATAACCAAGGGTGCAAATGTTGCTGGAGGAAGAGGT
TACTATCTGAAAGGGGATGGTGTACGTCTTAACCAAGCATTAATTAATTTTGCTCTTGATTTCCTGGAGAAGAGGAAATATACGCCATTG
CAGACTCCGTTCTTCATGAGGAAAGATATCATGGCAAAGTGTGCTCAGTTAGCTCAGTTTGATGAAGAACTCTACAAGGTCACTGGTGAA
GGAGATGACAAATATCTGATTGCCACTGCTGAACAACCTCTGTGTGCTTATCATTTGGATGACTGGATTCATCCTTCACAGCTTCCGTTA
AGGTATGCTGGATACTCGTCATGCTTCCCGCAAGGAAGCTGGTTCACATGGCCGCGACACACTTGGAATTTTTAGAGTCCATCAGTTTGA
GAAAGTGGAACAGTTTTGTTTAACCAGTCCAAATGGCAATGACTCGTGGGACATGCATGAAGAGATGATTAAGAACTCAGAGGAATTCTT
TCAGCAGCTAAACATTCCTTACCAAATTGTGGCTATTGTTTCTGGCGCACTGAATGATGCAGCAGCAAAGAAGTATGATCTGGAAGGGTG
GTACCCTGCATCAGCAGCTTATAGAGAGCTTGTGTCTTGCTCAAACTGCACAGACTATCAGTCGAGGAAATTGGAAATTCGGTTTGGACA
GAAAAAGGGTAATGAGCAAGCGAAGCAGTATGTGCATTTATTGAACTCCACCCTTACAGCGACAGAGAGGACTATGTGCTGTATACTTGA
GAACAACCAGAGGGAGGATGGAGTTGAAATTCCTGAGGTTCTACGACCATACATGGGTGGGAAGACATTCATGCCTTTCCAGGCCCCTCC
AGCAAAAGAAGCTAAAGGAAAGAAGTCAAAGGCATGATAATCTATCCAATCTTATACACTTAAACTTCCATTATGAAAAGAGCTAAATCA
TGTATTCTCTTGAACTTGGATTCTCCTTATAAGGAATCCTGAGGAGGAACAAGGTAATGAAGGCAAGGACAGTTAGTTTTGAATTTGGAA
GTGTAACAAACGAATTAGAAAACAGTTTATTTAAGTGGGTCATCAACATACAAAAGCAGATTGCTATCTCCCACTTGATGTCATTTTTGG
TTTAAGTTGATAGATTGCTTTTTAACTCCTATTACTATATTGTCAGATGTTAATTGCATGATTATTTAAACCTTTTTGAACCTAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1793	tRNA-synt_2b tRNA-synt_ser tRNA_ligase_II Pox_A_type_inc	10
2	26786	tRNA-synt_2b tRNA-synt_ser tRNA_ligase_II DegS tRNA-synt_thr	4
5	60822	tRNA-synt_2b tRNA-synt_ser tRNA_ligase_II DegS tRNA-synt_thr	4
1.1	103172	tRNA-binding arm tRNA synthetase class II (G H P and S) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Seryl-tRNA synthetase class IIa - Molecular Function: serine-tRNA ligase activity (GO:0004828) - Molecular Function: ATP binding (GO:0005524) - Biological Process: seryl-tRNA aminoacylation (GO:0006434) Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	7
2	121399	tRNA-binding arm Seryl-tRNA synthetase class IIa - Molecular Function: serine-tRNA ligase activity (GO:0004828) - Molecular Function: ATP binding (GO:0005524) - Biological Process: seryl-tRNA aminoacylation (GO:0006434) Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) tRNA synthetase class II (G H P and S) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	6
5	135382	tRNA-binding arm Seryl-tRNA synthetase class IIa - Molecular Function: serine-tRNA ligase activity (GO:0004828) - Molecular Function: ATP binding (GO:0005524) - Biological Process: seryl-tRNA aminoacylation (GO:0006434) Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) tRNA synthetase class II (G H P and S) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U244738	Solanum tuberosum #3
SGN-U253276	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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