Sol Genomics Network

Unigene SGN-U269873

Unigene Basic Information

Unigene ID:	SGN-U269873
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269873
mRNA sequence:	Length: 2027 bp

>SGN-U269873 Solanum tuberosum #4 (16 members)
TGAAAGTGTTCTAGATTCATAAGGCAACTCTCTCTGTCACTGTCGCCGGAGATTATTATTTCCCGATCTGATCGAAAGCAGGTCACCGGG
AACAATGGCGTTAGCTTTCGATGAATTCGGAAGGCCGTTTATAATACTAAGGGAGCAAGAACAAAAAACTAGATTAAGAGGCCTCGATGC
TCAGAAGGCCAACATTTCTGCCGGAAAAGCTGTTGCACGTATTTTACGTACCTCACTTGGTCCTAAAGGCATGGATAAGATGCTTCAGAG
CCCTGACGGCGATGTCACCATCACAAATGATGGTGCCACCATTTTGGAGCAGATGGATGTTGACAATCAGATTGGAAAGTTGATGGTTGA
GTTGTCACGAAGTCAAGATTATGAAATTGGCGATGGAACCACTGGAGTTGTTGTCATGGCTGGGGCACTGCTAGAACAAGCTGAGAAGTT
GTTAGAACGTGGTATTCATCCTATTCGGATTGCAGAAGGGTATGAAATGGCTTCAAGGATTGCAGTTGAGCATTTGGAGCGTGTAGCACA
TAAGTTTGAATTCGGTCTGAATGACATTGAGCCTTTGGTTCAAACTTGCATGACTACTTTGTCATCTAAGATTGTGAATAGATGCAAACG
TAGCATGGCTGAAATTGCTGTTAAAGCTGTTTTAGCAGTTGCTGATTTAGAGAGGAAGGATGTAAACCTGGACTTGATCAAAGTTGAAGG
GAAAGTTGGTGGGAAGTTAGAGGACACAGAGCTAATTTATGGTATTATAGTTGACAAAGATATGAGTCATCCACAGATGCCAAAGCAAAT
TGAGGATGCGAAAATTGCAATTTTGACATGTCCTTTTGAGCCTCCTAAGCCAAAGACTAAGCATAAGGTTGACATTGATACTGTGGAGAA
GTTTCAAACTTTACGCCTACAGGAGCAGAAGTACTTTGATGACATGGTCCAGAAGTGCAAGGATGTTGGTGCTACCTTAGTTATCTGCCA
GTGGGGTTTTGATGATGAAGCTAATCACTTATTAATGCATAGAAATTTGCCTGCTGTTAGATGGGTAGGTGGTGTGGAATTGGAGCTGAT
AGCAATTGCCACAGGTGGGAGAATAGTACCAAGGTTTCAAGAGTTGACACCTGAAAAACTTGGCAAGGCTGGTATTGTTCGGGAGAAAGC
TTTCGGTACAACAAAGGATAGAATGATTTACATTGAGCATTGTGCAAATTCAAGAGCAGTAACTATATTTATCCGTGGTGGCAACAAGAT
GATGATAGAGGAGACAAAACGTAGTATCCATGATGCTTTATGTGTTGCTAGAAATCTTATTCGCAACAATTCAATTGTATATGGTGGTGG
TTCAGCAGAGATTTCTTGCTCAATTGCTGTTGAAGCGGCTGCTGATAAACATCCAGGAGTTGAACAGTATGCAATCAGGGCATTTGCAGA
TGCTTTGGATTCTGTTCCAATGGCACTTGCTGAGAACAGTGGTCTCCAGCCTATTGAAACTCTATCTGCTGTTAAGTCTCAGCAAATTAA
GGAGAATAATCCCTGCTGTGGAATAGATTGTAATGATGTTGGCACAAATGACATGCGTGAGCAAAATGTTTTCGAGACCCTAATTGGGAA
GCAACAACAGATTTTGCTTGCAACTCAGGTTGTCAAGATGATCCTAAAGATTGATGATGTGATTACTCCTTCCGCGTATTGATGTTAAGT
ATGGAAATGCAAAATTTTCTTCGTCTTAGAGAAGATGAACGTTTTCCTTCTGGCTATGCAAACCAGAAGTTTTGTTGGGTGAAACTTTCA
CGATTTTATGCTTTGGCTTCTATGTTGTCTATTTGAGTAGAATTTTTGTGGTTGATGAATTTCACTTGATTGATGATCAGTTTCTGTCAC
GGTATTCTCCATTGAAAGATTATTTGCACCTTCATGGTATACTTTATTTGCAATGATGTAGCAACTATATTAAAAGGATTATGTGCCTGA
TGGATTTTATTATTAAGGTACCACGGTGAAGGAGCATTTAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22101	Cpn60/TCP-1 Chaperonin_TCP-1	67
5	57594	Cpn60/TCP-1 Chaperonin_TCP-1	12
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	130854	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U244370	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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