Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Unigene SGN-U269852

Unigene Basic Information

Unigene ID:	SGN-U269852
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269852
mRNA sequence:	Length: 1675 bp

>SGN-U269852 Solanum tuberosum #4 (28 members)
GTTTCATCTTAGCTCGTTTGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCA
GTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTCAGGC
TCAACCTTCTTGGGGTCAACAGCAGCAACAGCCATCGCAACCTATGTCTCAACAGTATGGTGCGACTAATCCTAGCCCTAGCTCGAATGT
TAATCCAAATGAGCTTCGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAATTATCTTTCCACTTGTTTCTATCACACCGG
CGAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCAGCTGC
AGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGA
GAGGCGAGATGATTCACCCGAGTATACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACC
CGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAGCAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCGCTGATGA
GAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACC
AATGGGTACCCCCCAGAAAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTATATTTGTTGGTGG
TTTGGATCCCAGTGTTGCAGAAGAACATTTGCGACAAGTTTTCTCCCCATACGGTGAATTGGTTCACGTGAAAATAGTGGCTGGAAAGCG
CTGTGGCTTTGTTCAGTTTGGTAGTAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGTATTCG
GCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGTCCGACCAGACTCAATGGGGTGGTAGTGCCGGTGGTGGTGCTGGTGCTGGTGCATA
TTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTACGGGAATTACCCAGGATATGG
GAATTATCAGCAGCCACAGCAGTGATGTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACATTCAAGTTTCCAGTGCTTAGGCTGATC
TTTCCCGTCGGTGTGACTGGTTGTACAATGATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAA
CTTTGAGTTTGCTATGACACTAACATGTACTGAAACATTCCGAGCAGTACCTTGACCTGTGTGTAGACTTTGTTAAGTTTTTTCTTACCA
TTTCCAGTATTCGATTGCATTTGGTTTAATGTTCGTGCAGATTTAATTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGTCGAAT
AAAGATGCTAGAATAGCTGTATTTTAGTCTGAAAGAGATGTGAAATTCTTTAGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	MXFL	Floral buds	6603	3
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (28)

Alignment image suppressed for unigene with 28 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	22060	RNA_rec_mot	87
5	56387	RNA_rec_mot ELAD_HUD_SF	52
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118541	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	59
5	129074	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	47

Preceding Unigenes (1)

Unigene	Build
SGN-U244647	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: