Sol Genomics Network

Unigene SGN-U269755

Unigene Basic Information

Unigene ID:	SGN-U269755
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269755
mRNA sequence:	Length: 1147 bp

>SGN-U269755 Solanum tuberosum #4 (30 members)
AATTAGAAAGTCCAATTTCTCTCTGCGTTCCATTCATTTTCCTCCATCATCGAGAAGAGAGAAAGGAAAAAAAACCCTAAAACGAGAAGA
TGCTTCGAGTAGCAGGTAGAAGGCTTTCTTCTTCAGCCGCTAGATCTTCATCTAGCTTCTTTACAAGAAGCTCTTTCACCGTTACCGATG
ATTCGTCTCCGGCCAGATCTCCTTCTCCGTCACTCACCTCTTCGTTTCTCGATCAAATCAGAGGTTTCTCATCTAATTCGGTTTCTCCCG
CACATCAGTTGGGTTTAGTCTCAGATCTTCCAGCCACAGTGGCTGCTATTAAGAACCCCAGTTCAAAAATTGTATATGATGACTCCAACC
ATGAGCGTTATCCACCTGGTGATCCTAGCAAACGTGCTTTTGCTTACTTTGTCTTGACAGGAGGCAGGTTCGTCTATGCCTCATTGCTTC
GCCTCCTGATTCTCAAGTTTGTTCTGAGCATGTCTGCTAGTAAAGATGTCCTTGCACTTGCTTCTCTTGAGGTGGATCTTTCCAGCATTG
AACCAGGGTCAACTGTTACTGTCAAGTGGCGTGGAAAGCCTGTTTTCATCAGACGCCGAACTGACGATGACATCAAATTGGCAAACAGTG
TTGATCTCGGCACCCTTCGTGACCCGCAACAAGATGCTGAGAGGGTTAAAAATCCAGAATGGCTTGTGGTTGTTGGGGTATGTACTCATT
TAGGGTGCATTCCTTTACCAAATGCTGGTGATTTTGGTGGTTGGTTTTGCCCATGCCATGGCTCCCATTACGACATCTCTGGTAGGATTC
GCAAAGGACCCGCACCGTATAATCTGGAGGTGCCTACCTACAGTTTCTTGGAAGAGAACAAGTTACTTATTGGTTGAGAAATTATGTCTT
AATTTCCAAGCCAACTTGTAGCTGCTGGACCAAAATTGGATCTTGCGTTTAGCTTTCTTGAGTTATACATGGATTGTATTTACTGACCAG
TACTGTTAGCACCGTTTTTTGAGTGAATAATTCTGCTGGATGCTGTTAAGAGATTTTCTCATGCTTCATATTTGTTTTGAATAAACTTTC
CAAAGATTTACTTATTTATTAGTCTAAATATGTGATTGTGACCATAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
FeS1	Rieske iron-sulfur protein

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	119	ABC1	110
2	24382	Rieske_dom Rieske Rieske_proteo UCR_TM_region	8
5	58421	Rieske_dom Rieske Rieske_proteo UCR_TM_region	8
1.1	101509	ABC-1 Protein kinase-like	95
2	121278	Rieske iron-sulfur protein - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: membrane (GO:0016020) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Ubiquinol-cytochrome c reductase iron-sulfur subunit - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Ubiquinol cytochrome reductase transmembrane region - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) Rieske [2Fe-2S] region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	7
5	132068	Rieske iron-sulfur protein - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: membrane (GO:0016020) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Ubiquinol-cytochrome c reductase iron-sulfur subunit - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) - Cellular Component: ubiquinol-cytochrome-c reductase complex (GO:0045285) Ubiquinol cytochrome reductase transmembrane region - Biological Process: electron transport (GO:0006118) - Molecular Function: ubiquinol-cytochrome-c reductase activity (GO:0008121) Rieske [2Fe-2S] region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U244664	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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