Sol Genomics Network

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Unigene SGN-U269688

Unigene Basic Information

Unigene ID:	SGN-U269688
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269688
mRNA sequence:	Length: 1106 bp

>SGN-U269688 Solanum tuberosum #4 (26 members)
GGCAGCTCCGGCGAATTCATCTGCTTATCTGTCACCGTTCTCCGGTGAGGTCTACTAAGGCTTATAGCTCAAAGATGGGTGTTAAAGCAA
GGAAGAAAGCAATAACGAAGAAATTGAAAAAGGGAGCAAGCGATTTTTCTGCTTCTTCAGCTTCTAAAGATGAAGCCCGTGAGTTTCTGC
CATTAGAAGGTGGGCCAGCGCAGAAGCTCCCAAAGACTGAATTAAAGGAAAATAAAGCAACAGTGTTATATATCGGGAGAATCCCACATG
GATTTTATGAGAATGAAATGGAAGGTTTCTTTAAGCAATTTGGTACCATCAAGAGGCTTAGAATTGCAAGGAATAAAAAGACAGGAAAAT
CAAAGCATTTTGGCTTCATAGAATTTGAGTCTCCTGAGGTTGCAAAAGTTGTTGCGGAAACTATGCATAACTATCTCTTGTTTGAGCACT
TACTGCAAGTTCAGCTTATTCCTCCTGAACATGTACATCCAAGATTGTGGAAAGGTGTGAACCGCTGGTACAAACCCTTGGATTGGGTTA
AAATTGAAAGGAAACGTCAGGACAAGGAAAGAACACTGGATGATCACAAGAAGTTGGTTGAAGGAATATTAAAACGTGACAAGAAGAGGC
GAAAGAGGATTGAAGCTGCTGGAATTGACTATGAGTGCCCAGAAATGGTGGGTTCAATTCAGGCTGCACCAAAGAAGATCAGATTTGATG
CAGATTAGATCTTACCAGCAGAACTGAGACAGCATGAAGATTAGTATTTGGCAGTTTGCATTTCAATTCATGATCATGGCATTGGAACTG
TGCTACTGATGGGATGCTGTGTGCTGCTTAAATTTACTAAATTGTCAACGAAGGTGGAAAGATTGCTAGCACCATACATTTTTCTGATAG
AATTAGCATTATCATAGATGACACCGAGGCTGTAAGACATTCCAAACATCTACTTGTATTAGCTTTAATTTTTGTAACTCCAACTCGAAA
TGACTAGTGGATTTCTTTGGGTGATAAAATGAATTCTGTCCAGGCTCTGGCTGGTAATGTATCTCAATCAAAGTGTTTGGACTTTGATGT
GCCAGATTTGTGGATCTTTTGATCCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ241864	RNA binding protein-like

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	24328	RNA_rec_mot	8
5	58382	RNA_rec_mot	8
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	120816	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	8
5	131066	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U244007	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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