Sol Genomics Network

Unigene SGN-U269577

Unigene Basic Information

Unigene ID:	SGN-U269577
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269577
mRNA sequence:	Length: 1513 bp

>SGN-U269577 Solanum tuberosum #4 (31 members)
TTCAAAGAACCAATCTTTCTGCTGAAGTAGTTGGAAAAAATGGCAGCAGAAATGGCTTTAGTAAAACCCATAACCAAATTCAACACCATT
AACACCACCACTGCACGGCTGAGCAACCGCAGACTGACGTTCACAGTTAGAATGTCAGCCGCCACCACCACCCCACCAACTTCAAAACCT
TCCAAGAAACCTCAGAAGCAAGGAATCAAAGAGTCCCTTTTGACACCAAGATTTTACACTACTGATTTTGATGAAATGGAGACCCTTTTC
AACACTGAGATCAACAAGAACCTGAATGAGGCTGAGTTTGAAGCCCTTTTGCAGGAATTCAAAACTGATTACAACCAGACTCATTTTGTT
AGGAACAAGGAGTTTAAAGAAGCTGCTGACAAAATTCAGGGACCTCTAAGGCAGATCTTTGTTGAATTCTTGGAGAGGTCTTGCACTGCT
GAGTTCTCTGGTTTTCTTCTCTACAAGGAACTTGGAAGGAGGCTCAAGAAAACTAATCCTGTTGTTGCAGAGATTTTCTCCCTCATGTCT
AGGGATGAAGCTCGCCACGCTGGGTTTTTGAACAAGGGTTTATCTGACTTCAATTTGGCGTTGGACTTGGGGTTCTTGACCAAAGCAAGA
AAATACACTTTCTTCAAACCAAAGTTCATCTTCTATGCAACTTACTTGTCTGAGAAAATTGGGTACTGGAGGTACATTACCATATACAGG
CATCTCAAGACCAATCCCGAGTTCATATGTTATCCGATTTTCAAGTACTTCGAGAACTGGTGCCAAGATGAGAACCGCCATGGTGATTTC
TTCTCTGCTTTGATGAAAGCACAGCCTCAGTTTCTCAATGACTGGAAGGCAAAGCTGTGGTCTCGCTTCTTCTGCCTTTCGGTTTATGTC
ACAATGTACTTGAATGATTGCCAAAGAACAGATTTTTACGAAGGCATTGGGCTTAACACCAAAGAATTTGACATGCATGTCATCATTGAG
ACAAACCGCACAACTGCAAGGATTTTCCCTGCTGTCCTTGATGTTGAGAACCCAGAATTCAAGAGGAAGTTGGACAGGATGGTGGAGATT
AACACCAAACTAATTGCTGTTAGTGAGAGTGATGAGATTCCACTGGTGAAGAATTTCAAAAAGATCCCTCTGATTGCAGCTTTGGCTTCT
GAGTTATTGGCTGCATATCTCATGAAACCTATTGAGTCAGGTTCAGTTGATTTTGCAGAGTTTGAACCACAACTTACCTACTAATTTCCT
TTTTACGAGAAACAGAATCTCGGTTGTTTTGTTTTCACATAGAGGTGCATGTTCATTGTTGTAAGTTGTATAGTGTATTCAAGAAACAGT
TTCCTGCATAGAGGACACTCCCTTGTATTATCAGAATGAATTTATTGTGAGTACATCATTAAAAGCCTTCATCTTCACTGGTCTCATTTC
TTAGGCATTCTTCAATTGATGAAGGTTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAANCTCGAGGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	14
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2153	Rubrerythrin CRD1	8
2	24349	Rubrerythrin CRD1	8
5	58396	Rubrerythrin CRD1	8
1.1	103318	Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Ferritin-related Ferritin/ribonucleotide reductase-like Rubrerythrin - Biological Process: electron transport (GO:0006118) - Molecular Function: metal ion binding (GO:0046872)	7
2	121194	Rubrerythrin - Biological Process: electron transport (GO:0006118) - Molecular Function: metal ion binding (GO:0046872) Ferritin/ribonucleotide reductase-like Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Ferritin-related	7
5	131437	Rubrerythrin - Biological Process: electron transport (GO:0006118) - Molecular Function: metal ion binding (GO:0046872) Ferritin/ribonucleotide reductase-like Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Ferritin-related	7

Preceding Unigenes (1)

Unigene	Build
SGN-U244029	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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