Sol Genomics Network

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Unigene SGN-U269424

Unigene Basic Information

Unigene ID:	SGN-U269424
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269424
mRNA sequence:	Length: 901 bp

>SGN-U269424 Solanum tuberosum #4 (20 members)
GTGTTTTCCCTGGAAATCGAAGAGGCGAGAAGCTTAAAAAAACAAAAAAAACCCATCTTTTTATCTGTCTTGTCTCAATTCCACGACTTT
CTTCTCCCTCTCTCTCTCTTTCTTTGTAGAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAGGCTTTCAGCCTATT
CGACAAGGACGGAGATGGTTGCATTACAACTAAGGAGCTTGGGACTGTGATGAGGTCGTTGGGACAGAACCCAACTGAAGCTGAGCTCCA
GGACATGATAAATGAAGTGGATGCTGATGGTAATGGAACCATCGACTTCCCAGAGTTTTTGAACCTCATGGCGAGGAAGATGAAGGATAC
AGACTCAGAGGAGGAGCTGAAGGAGGCATTCAGAGTGTTTGACAAGGACCAGAATGGGTTCATCTCTGCTGCTGAGCTCCGTCATGTGAT
GACTAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGAAATGATCAGGGAGGCTGATGTTGATGGCGATGGACAAATTAACTACGA
TGAGTTTGTTAAGGTCATGATGGCCAAGTGATTTCCCTCTTCTGAAGTTGTTTTTTTTAACTGTGAAAAAAGACCAAACATTCATCAGAC
TGGGTCAGCTTTGGGATAATGGTTTCTTTTTACAAATTTATCCGGTTAGGTTGTACCTTTGGATGAATGTAATGCTCTATCGTTTGGTGG
TTGAATCACTTTCTTTCTCTTATTTGGTTGTCTTGTACCTCGGCTGATAAAGTTGTCTGGTTCATATTTAGGGCTTTGTTGAACTAAGTC
TATGGAGACTGTAACTTTTTATTTATTTATTGACGAATGCAGTTGTAATAGCTTGCATTAATGCAAACTTTTTGAGGCTGGAAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
pcm5	PCM5 calmodulin
calmodulin	calmodulin

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2	Prot_kinase	1610
2	21972	Prot_kinase	672
5	56278	EF-hand	157
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128952	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	130

Preceding Unigenes (1)

Unigene	Build
SGN-U245145	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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