Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Unigene SGN-U269309

Unigene Basic Information

Unigene ID:	SGN-U269309
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269309
mRNA sequence:	Length: 1745 bp

>SGN-U269309 Solanum tuberosum #4 (38 members)
TTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGA
CCGCCGGTGATCGGTGTATTCTCCATCTCCTCAACATTTTGATTCTTTCGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTT
TCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGG
AGATGAATGACATGAGAATCAGGGATGATAAGGAAATGGAAGCAACAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGA
CAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGAGTGGTGT
TTCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATAAAGAAGGTTCTTCAAGATAAGAGATATAAGAACCGAGAGTTGCAGACAA
TGCGTCTTCTTGACCACCCTAATGTTGTGTCTCTGAAACACTGCTTCTTTTCCACAACTGATAAGGATGAACTATATCTTAACTTGGTTC
TTGAGTATGTACCTGAAACTGTTCACCGTGTTATCAAACACTACAATAAGCTGAACCAAAGGATGCCGTTGATACTTGTGAAGCTTTATA
CATATCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTATGCCACAGGGACATCAAACCTCAGAATCTTTTGGTGAATC
CACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTTAAAGGAGAACCAAATATTTCTTACATCTGCTCTAGGT
ATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTAC
TTCTTGGTCAGCCTTTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTTTTGGGCACTCCTACAAGGGAAGAAA
TTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGATATTCCATAAGCGCATGCCTC
CAGAAGCAGTTGATCTGGTCTCAAGACTTCTGCAGTACTCTCCTAACTTGCGCTGCGGTGCTTTGGATGCCTTGGTTCACCCCTTTTTTG
ACGAGCTTCGTGATCCCAATACACGCCTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGAGTTGAAGAATGTGC
ATGCAGAGATATTATTGAAGTTGGTTCCGGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAAT
AATTTAAGTGTACCCGTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTATCTGTTGTCCCTTT
GTATTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGACCTTTAACAAATACCCGATCTTCAACCTGTGTTCCTT
TTACCCTGTTCCGATATGTCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACTTTATTATTATGGGATTTCAAAG
TAATGATAGGGTGACTGTTGATATGGCTAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ntk1	protein kinase ntk1	protein kinase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (38)

Alignment image suppressed for unigene with 38 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2	Prot_kinase	1610
2	21980	Prot_kinase	311
5	56349	Prot_kinase Ser_thr_pkin_AS	63
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	129072	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	47

Preceding Unigenes (1)

Unigene	Build
SGN-U243983	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: