Sol Genomics Network

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Unigene SGN-U269232

Unigene Basic Information

Unigene ID:	SGN-U269232
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269232
mRNA sequence:	Length: 1494 bp

>SGN-U269232 Solanum tuberosum #4 (27 members)
GAGGAGTCGGAGTACAGCTTTTGCTCTCGGGGTCCCATAATCGTCCGCCATTAACAAGGATTTTGAATTTTAGCTAACAAGGACCAGACA
TGTCTGGAATTATAGGTCGAACAATGGCCAATAGAAGGATTTCTGATTTGAACAAGTTCTTGGTGGGAAGTAGAGTATTTGCATCTAGAA
CTTACTCTTCCGCAGTTAAAGAGATGACAGTGCGTGACGCACTAAATTCAGCTCTAGATGAAGAAATGTCTGCGGATCCTAAGGTCTTCG
TTATGGGGGAAGAGGTTGGTGAGTACCAGGGTGCCTATAAGATTACAAAGGGGCTTCTGACAAAATATGGTCCGCAAAGGGTTATCGATA
CACCAATTACTGAGGCTGGATTTACTGGAATTGGAGTTGGTGCAGCTTACCATGGTCTAAGGCCCGTAATCGAATTCATGACATTCAACT
TTTCCATGCAGGCAATTGACCATATTATCAATTCTGCTGCAAAGTCAAACTACATGTCTGCTGGTCAGATATCTGTGCCCATTGTTTTCA
GGGGTCCTAATGGTGCTGCAGCTGGTGTCGGTGCTCAACACTCTCAGTGCTATGCGGCATGGTATGGTGCATGTCCAGGATTAAAGGTAC
TAACTCCGTACTCTTCCGAAGATGCTCGTGGCTTGCTCAAAGCTGCTATCAGGGATCCTGATCCTGTCGTGTTTCTGGAAAATGAATTGC
TATATGGTGAGTCTTTCCCTATTTCCGCTGAAGCTCTTGATTCTAGTTTCTCTCTCCCCATCGGAAAAGCTAAGATAGAACGCGAAGGGA
AGGATGTGACAATCACTGCCTTCTCAAAGATGGTTGGCTATGCTCTCAAGGCTGCTGAAATTCTTGCCAAGGAAGGAATTAGTGCTGAGG
TTATAAATCTGCGCTCGATCCGACCACTTGATAGACCTGCTATTAATGCATCTGTGAGGAAAACCAACAGACTTGTAACTGTTGAGGAAG
GATTTCCACAACATGGTGTTGGCGCTGAAATCTGTGCATCTGTGGTTGAGGAGAGCTTTGAGTATCTTGATGCACCGATTGAGAGGATAA
CAGGTGCTGATGTTCCTATGCCATACGCTGCAAATCTTGAAAGACTGGCTGTTCCACAGGTAGAAGACATTGTTCGTGCAGTCAAGAGGG
TTTGTTACCGATCAAGTAAATAAATCAGTTCCAATGGCTGCAGCTGCTTAGGCTTGGTCCAACAAGGTCTTGATTGATCCAAAGCATTTA
ACTTCTTTTTGTGGATATCAATTCTTTATCCGCCTTCTGGAAAGTTTAATTGACTGTAAAACCAGCCAAACTGGTAAACTAACGAATGAA
ATCTGCTGCCAGATTATTCAGCCACACGAGGAAATAGTTCTTGTAGAAAATAATATTTACAGCTTCTTTCCTTTTTTGGTGATACGTTCA
AGAAAATGTTGTTACAAGAGAATACATGCGTTCAGGGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	9
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	132	Transketolase_CR Transketolase_C	101
2	22154	Transketolase_CR Transketolase_C	53
5	56558	Ribosomal_L37ae	32
1.1	101625	Transketolase C-terminal Transketolase central region Transketolase C-terminal-like	56
2	118698	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	35
5	129763	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	16

Preceding Unigenes (1)

Unigene	Build
SGN-U243849	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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