Sol Genomics Network

Unigene SGN-U269222

Unigene Basic Information

Unigene ID:	SGN-U269222
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269222
mRNA sequence:	Length: 1836 bp

>SGN-U269222 Solanum tuberosum #4 (7 members)
CCAATTCTTGATGGGTTGTTGTGAGGGGGAGGAAATATCTAAACAGGAGAAAAATGGAAGTTTGGTTAGTAGAGAAGAAAAGGGATTGCA
CAAAATCAAATCTTTCACTCAAAACTTTGCCATTTTGGTTGGTTTTAGTAGTGAAAGTATCTGTTTTCATGTCTTCTTCTTATAAGTGAG
AAAAAAAAAGGACAAGAACACTAAATTTAACTCCTTTTTTGCACTTCTGTTTCTCAGTAAATATAAGGTTAAGAAAGAATTCAAGTAGGT
GAACTTTGATCCCAAAACAAAAGGAAACAAATATTGAACTTTGTTATTGTTTGGAAATTTGGATCATCAAATCATAATTATGAAAAGACC
TAGTAGCTCTGATTCTTTGGGAGCTTTGATGTCCATGTGTCCAAGTACTACAGATGACCAGAACCATGGGAACTGCCATGTGTATTCAAC
AAGGGACTTTCAGTCTATGTTAGAATTAGGCTTAGATGAAGAAGGATGTGTGGAAGAATCTGGCCAAAAGAAAAGGAGACTAAGTGTTGA
ACAAGTGAAAGCTTTGGAGAAGAATTTTGAAGTTGAGAACAAACTTGAACCTGAAAGGAAAGTGAAATTGGCTCAAGAACTTGGATTGCA
GCCTAGACAAGTAGCTGTTTGGTTCCAAAACCGACGTGCTCGATGGAAAACAAAGCAACTTGAGAGAGATTACAATGTTCTTAAAGCCAA
TTTTGATTCACTCAAACACAACTATGAATCTCTCAAACATGACAATGAAGCTCTTGTCAAAGAGATTCGTGAGCTGAAATTAAAGGTATA
TGGTGGTGAGAATGGAGAAAGCAGAGGAGCTGTTGTTGTTTCAGTGAAAGAAGAAGCTATGGAATCTGAAAATGATGACAAAATGATTGA
ACAAAACAAGCCAAATGATCTTCTTGAAGAAGAAGAAGATCAAGATCAAGATCAAGATGATGATGTTGAGATCAATGCTACTATTGCATC
CACCATTTTTGCTGATTTTAACAAAGATGGTTCCTCAGATAGTGACAACTCAAGTGCAATCTTGAATGAAGATAACAGTCCAAATGCTGC
TACAATTTCATCGTCTGGTGCATTCTTGATCTCTAATGATGGTGGGGTTGGTTGTTCATCTCCGTTGAATTTCACCTTCAAGTTCACAGA
ATCAAGTCCAAAGTCAATTCTTGGAGATTCCCAAAAAGCTAATTGTTTTACTTATCAACCTTCGTCAACAACAACAACAACACAGTATGT
GAAGATGGAGGAACATAATTTCTTCAACGGCGAAGAATCCTGCAGTACTCTTTTCTCAGATGAACAAGCTCCTACACTTCAATGGTACTG
TTCTGAAGATTGGAACTTTAAAGACACTCCTAGTCATCTTTCTTGATCATGAATAAAGGAGGAAATTGTCTTATGGAACCAAATTTTGTA
TAGTGGTTAAAAAAATTGCCTAATGGGAACAAAGTGAAAAGATGAAGTTTTTGGATTTTTCCCAAGTTGAAGAGGGGGTTGTGGGGGGGG
GGTGAAAAGGGGGTGGTNAGGGTGATAAGTAAAAAACAAAAAAGGGAGATGAAGAAAAATTCAAGAAAATGGTTATGGAGAGAAAAAGAG
CTTCCTTTGTAATGGCAAATAAAAGTGGCTAAAAGTATAAATAACCATGCATTCTATATTTGAATGATTTTATAATCCTTTTTCCATGCA
TGAAGGGCAAAATGAAAATGGTAATTCATAATTAATAATTATGCCTTTTAAATTATTTGATATGCAAAAGTTTAAACTCATCAATCCAGG
CACATTTCGAGATTTCAAATAAATCTATCTTTGATT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	60	Homeobox	203
2	22115	Homeobox HTH_lambrepressr	61
5	56716	Homeobox HTH_lambrepressr	24
1.1	101432	Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-like	183
2	118482	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	93
5	130149	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Helix-turn-helix motif lambda-like repressor - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Leucine zipper homeobox-associated - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U253602	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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