Sol Genomics Network

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Unigene SGN-U269109

Unigene Basic Information

Unigene ID:	SGN-U269109
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269109
mRNA sequence:	Length: 2841 bp

>SGN-U269109 Solanum tuberosum #4 (47 members)
CAGTTGTTTACAGTTTTCCTAAACGGAACTCTACCATCTCTTTTTTCCGGTTACCGTTTAGGTTTCCGACCAATTTTCTTCTTCTCCGGT
GAACTATTCCGGTTAAAAGTTGTATGGTGGGGTGTTTGTTTGAATCTTAGGTTTGTTTTTCTGTTGGTTTTGAGTTTTAATTCTTTGTTT
TGATTAAGAAAATTTGCTTCTTCTGAAGTCGTTGTGGGGATATTCGGGTCGTGTAAGAGTGTGTTAGAAGGTGATTATCTTTTGATTAAG
TTCTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCTCTGGCCTCGGCGGGTTCTAAAGCCCCCAGCTATTACAACATTGGTAAACAAAT
CATTTCTGTATATTAGTTTTCCCCATTCTTTGATTCTTTTTTTTTCGATTTTACGAGATGCCTGCTCTAGGTTGTTGTGTAGAATCTGCT
GTTTCCCCTCCTCTTGGCTATTCCTTCCTTTCCACGCCGGAGATTTTTTCCTCCGGCGTACCTCCGTCGACAAACGCTGTCCCTTTTACC
ACCCATTGGTCACCGGAGCTCTCATCCGATCTGTATCGGGTTGATGGATGGGGTGCTCCTTATTTCACCGTTAATTCTTCCGGTGATATA
TCTGTCCGGCCACATGGTACAGATACCCTTCCTCACCAGGAAATTGATCTCCTTAAGGTTGTGAAGAAGGCTTCCGACCCGATAAATTCT
GGTGGGCTCGGGTTACAACTTCCACTCGTTGTTCGGTTTCCTGATGTTTTGAAGAACCGATTGGAGTCTCTTCAATCGGCTTTTGATTAT
GCTGTCCAATCTGAAGGATATGAGGCTCATTACCAAGGTGTTTATCCTGTTAAATGCAATCAGGACAGGTTCGTTGTTGAAGATATTGTC
AAATTCGGGTCGGGTTTCCGGTTTGGTCTTGAAGCTGGGTCAAAACCTGAGCTCCTCCTAGCCATGAGCTCTCTATGCAAGGGCAGCTCG
GAGGGTCTTCTTGTATGCAACGGATTCAAGGATGCAGAATACATTTCACTTGCTTTGGTTGCAAGAAAGCTCCAATTGAACACGGTGATT
GTGCTTGAACAAGAGGAGGAGCTTGATTTGGTGATTGACATCAGCCGTAAAATGGCGGTCCGGCCTGTGATTGGGCTCCGGGCTAAGCTT
AGGACCAAACATTCCGGTCATTTTGGATCCACTTCTGGAGAGAAAGGTAAGTTTGGGCTTACAACAACTCAGATCCTTCGTGTGGTGAGG
AAACTCGAAGAATCCGGAATGTTGGATTGTCTTCAGCTGCTGCATTTCCATATTGGATCTCAGATCCCTTCAACGGCGTTGCTTGCTGAT
GGTGTTGGTGAGGCTGCTCAGGTTTATTCTGAGTTGGTCCGCCTTGGTGCTGGCATGAAATTCATTGATATTGGCGGTGGGCTTGGAATT
GACTACGATGGTACCAAATCTTCCGATTCTGATGTTTCCGTCGGATATGGCCTTCAGGATTACGCCTCTACAGTTGTTCAAGCTGTCCGG
TTTGTTTGTGACCGGAAGAACGTGAAGCATCCGGTGATCTGTAGCGAAAGTGGCAGAGCAATTGTATCTCATCACTCTGTTCTGATATTT
GAAGCTGTGTCTTCAACTACTACACGTTCTCAAGAGTTGTCCTCGGTGGGTCTCCAGTCCTTTGTGGAGAAACTTAATGATGATGCTCGT
GCTGATTACCGGAATCTATCTGCTGCTGCTATTCGCGGAGAGTACGATACCTGTATGCTTTATGCCGATCAGTTGAAACAGAGATGTGTG
GAGCAGTTCAAAGACGGTAATTTGGACATTGAACAGCTTGCTGCCGTAGATGCCGTCTGTGACTTTGTGTCAAAAGCTATTGGAGCTTCT
GACCCTGTTCGCACATATCACGTGAATCTGTCCGTTTTCACTTCAATTCCTGATTTCTGGGCAATTGACCAACTATTCCCGATTGTTCCC
ATCCACAAACTAGATGAACGTCCTTCAGCTCGGGGAATTCTATCCGACTTGACATGTGACAGTGATGGAAAGATCGATAAATTCATTGGA
GGCGAGTCAAGCTTGCCTCTCCATGAATTGGGAAGTGGAAATGGCGCGCCTTATTATCTGGGAATGTTTTTAGGCGGGGCATATGAGGAA
GCCCTCGGGGGACTCCATAACCTATTTGGCGGACCTAGCGTCTTGCGTGTGTCACAAAGCGACAGCCCTCACAGCTTCGCTGTAACATAT
GCAGTGCCTGGGCCGTCCTGTGCTGACGTCCTCCGAGCAATGCAACACGAGCCTGAACTCATGTTCGAGACACTCAAGCACCGTGCGGAG
GAATTCATGCACAAGGAAGAAGAAGAAGAAGAAAATAAGGAAGTGGCATTTGCATCATTGGCCAGCAGCCTAAATCAGTCGTTCCACAAC
ATGCCTTATCTTGCGCCACATTCGTCTTGCTGCTTTAGTGCTGCTGCAAACAGCGGTGGGTATTACTATTGCAATGATGAGAATATTGTT
GGTGTTGGCGCAGAATGTGCAATAGGGGAGGAAGAGTTTTGGCCATACTGCGTTGCTTAAAGAGTTTCACGTCATTTTCAGATTCCGCCA
TTGCTCCTTTTTTTTTTTGTTGTTCTTCAAGTAATAAAGTTTGTCTGTTTCATTAGCGCTACGGTATGTTAAATTTATGTCATTTTTGGT
GTAATGTCCTAGTTATGGAGAAAGTAAGGAATTGTTCAATCTCCTTATGTAATTTTCTCCTCCATCTTATGTAATCTTCTCCTTATTAAA
TGAAATTTTACTTTAGAAAAAAAAAAAAAAAAAAACTCGAGACTAGTCCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	8
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	8
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	7
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	514	Decarbxylse2 DAP_decrbxlase	34
2	23220	Decarbxylse2 Arg_decrbxlase DAP_decrbxlase	14
5	57279	Decarbxylse2 Arg_decrbxlase DAP_decrbxlase	14
1.1	101407	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824)	255
2	119696	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13
5	130022	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U243775	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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