Sol Genomics Network

Unigene SGN-U269073

Unigene Basic Information

Unigene ID:	SGN-U269073
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269073
mRNA sequence:	Length: 3197 bp

>SGN-U269073 Solanum tuberosum #4 (49 members)
TATTCAGGTCCATCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCATCAGTTGCTGGTGAAAGGACGACCAAATTCAATGGAT
CTGGGAAAACAAAAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCA
ATGCAATAGATACACTAGTTAGATCTGGACAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGACCACGAGGTTGCCGAT
TTGTACCAAAAGCAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACA
ATTTTGTTGGCACTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATT
TGAAAGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTCGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGC
GTGTTCTGGAACTCTCTCTGGAGGAAGCCCGCCAGCTAGGGCATAACTATATTGGTTCGGAGCACTTGTTACTTGGATTGCTACGTGAAG
GTGAAGGTGTGGCTGCCCGTGTCCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGTACTCAGGTGATCCGAATGGTTGGTGAGAGTA
ATGAGGCTGTTGGTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTACGGAACAAATTTGACAAAATTGG
CGGAAGAGGGAAAATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACC
CTTGTCTTATTGGAGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAACGGTGATGTCCCTGAAACAA
TTGAAGGGAAGAAGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGC
TGATGGAGGAAATTAAACAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCA
TCGATGCTGCAAACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATA
TTGAGAAAGATCCTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGC
TTCGTGAGAGGTATGAGATTCATCACAAACTTCGTTACACTGACGAGGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGTG
ACCGATTTCTGCCTGATAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGCTCCCCGAGGAAGCAA
AAGAGCTCGAGAAAGAGCTTCGTCAGATTACAAAGGAGAAGAATGAAGCTGTTCGCGGTCAAGATTTCGAAAAGGCTGGGGAGTTACGTG
ATAGAGAAATGGATCTTAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAG
GTCCTCTTGTAACAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACC
GTCTCCTAAAAATGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCGC
GAGTTGGCCTCAAGAATCCCAATAGGCCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCAC
TGGCTACATATTACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACGGTCTCTAAGCTCATTG
GATCCCCCCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATG
AGATTGAGAAGGCTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAG
ATTTCAAGAACACACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACT
TTGATGAGAAGGATAGCAGTTACAATCGTATCAAGAGCTTAGTGACTGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGAT
TGGATGAGATGATTGTATTCCGTCAACTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTATTTGAGAGGTTGA
AAGTTAAGGAAATAGAACTTCAAGTGACAGAAAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTC
TGAGAAGAGCTATTATGAGACTGTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAGGTGAGATTAAAGAAGGTGATTCAGTTATTGTGG
ACGTTGATTCAGATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGACCCGGCTCCTGAGCCTATCCCCGTTTAGATCA
GGTGATCACATTTTAGCTCAACAGTCTGTCTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCATATGAAAGCA
ACTTTTGAGTTTTATCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGAGCTTTAATGATTTTA
CAGAAATATATTGGATTAAGATTGTAGTTGGTCACAAGAAAGTGTTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATT
GTAGGCGACAGTTAAATCGTTGTCCTTGTATCTCTCATCTTATGTTTACCTCTTTTCTCATTATTATTTGACTCAGATTACAATAGTTTA
GAGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY450635	ATP-dependent CLP protease

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	6
Solanum tuberosum	PPC	leaf 6 week old	5062	8
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (49)

Alignment image suppressed for unigene with 49 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 8 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P72107 (927 Aa)

FRSIMARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGQTLQSKVAAATYVRRPRGCRF
VPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKR
VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLA
EEGKLDPVVGRQPQIEXGHSNLGSAAKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKL
MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGL
RERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRD
REMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAIVALFDVXR
VGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE
IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRL
DEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVD
VDSDGNVTVLNGSSGTPSDPAPEPIPV

SignalP predicts non-secretion with a score of 0.351

IPR003959 AAA ATPase, central region
IPR003593 AAA ATPase
IPR001943 UvrB/UvrC protein
IPR001270 Chaperonin clpA/B
IPR004176 Clp, N terminal

Prediction based on longest six frame method

>SGN-P210916 (927 Aa)

FRSIMARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGQTLQSKVAAATYVRRPRGCRF
VPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKR
VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLA
EEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKL
MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGL
RERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRD
REMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRAR
VGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE
IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRL
DEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVD
VDSDGNVTVLNGSSGTPSDPAPEPIPV

SignalP predicts non-secretion with a score of 0.351

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	192	Clp_N	76
2	22248	Clp_N AAA_ATPase_centr	40
5	56468	Clp_N AAA_ATPase_centr	39
1.1	101566	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	72
2	118715	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	34
5	129182	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	33

Preceding Unigenes (2)

Unigene	Build
SGN-U244102	Solanum tuberosum #3
SGN-U258586	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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