Sol Genomics Network

Unigene SGN-U268916

Unigene Basic Information

Unigene ID:	SGN-U268916
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268916
mRNA sequence:	Length: 1486 bp

>SGN-U268916 Solanum tuberosum #4 (32 members)
TTTTTCACCAAATAAAACCATATTAGTTGCATATATCAGATTATATGTCATTTACCTAAGTATTAAATCAGAATGTATCAATTACTATAA
GCTTATTACACAATTGTAAAAAATAATCATCTTTATAACTCTTAGTTGAAACTATGGTACAACAGACCTCTTCATATGAATTTGAAATTC
AACAATGGCAGCCACCGTAATTTTACGGCTTCAAAGTACACTCAAAAGGTTTGTTATTTGACTTAAATTAATAGGAAAATAGGAGGGAAA
CCAATGAATATGTTCTTTTTTCTGCAAAATTGTTAAGCGCGTGCACACATGCAAAGCAGCGGAGAGAAACTAAGCTGCAGCAGACAGTTT
ATATTCCTGTTCATCAAGGTTGAGAACTTCCAGCAACTTAGGCCATGATTCGGGGATGCCTCCCGGTAAATCAAATTCCAGTAACTTTCC
TTGGCTACGGTAGAAGTCCTCAACAGGCTGACTCTTATCCCAGTATATACTGAGCCTTTCCTTAACAATAGCTTCTGTATCATCTGCTCG
AGTGATTAACTTTGAAACACACTGTGAAGGGGGGTTAAGCGGAGCCATGCTGATCCTAGGAGCCCCATTTTTTTCTTGAAAAATAATAGT
AGTACATTAAAAATAAGAAAGAAAACACCATGTCTCTTACTATTCCAACAAACCTTTCAAAACCCATTTCAACATCTAAGTTTGGGTCTC
AATTTACCACAAAACCAAGAACTTCAGCCATTGTGTGTTCTTCAAACCAAACCCCTGTTTCTAATTCAACAGAGGAAAGTTCATCTTCAT
TAAAGGCATTCTCTGCAGCACTTGCTTTGTCTTCTATTCTGTTGTCAGCACCAGTTCTTCCAGCTTCTGCTGATATCTCTGGGCTTACAC
CTTGCAAGGATTCAAAACAGTTTGCTAAAAGGGAGAAGCAACAGATCAAGAAACTTGAGAATTCTTTGAAACTTTATGCACCTGATAGCG
CCCCTGCACTTGCTATTAATGCCACTATTGAAAAAACTAAACGCAGGTTTGACAACTACGGGAAACAAGGACTGTTGTGTGGATCAGATG
GACTACCACACTTGATAGTGAGTGGAGACCAGAGGCACTGGGGTGAGTTCATCACACCAGGGATCCTCTTCTTGTACATTGCTGGATGGA
TTGGATGGGTAGGAAGGAGCTACTTGATTGCAGTAAGAGATGATAAGAAACCAACAATGAAGGAAATCATCATCGATGTTCCATTGGCTA
ATAGACTCGTTTGGAGAGGCTTCATTTGGCCTGTTGCTGCTTACAGAGAGTACTTGAATGGAGACCTCATTGACCCTAATGTCTAATTTT
GATTATCCATGTTTAAATTTCTCTTGTTGGAGACTCGTGGAATTATACTTTCACTTGTTTATATCCATGAAAGATTGTGAATTTTCTATA
CCATGTGTTGCTAGATGATGGCTAGTTCACGGTCTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF411937	AF411937 adenylate kinase	adenylate kinase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	4
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1534	PSI_PsaF	12
2	23491	PSI_PsaF	12
5	57571	PSI_PsaF	12
1.1	102659	Photosystem I reaction center protein PsaF subunit III - Cellular Component: photosystem I reaction center (GO:0009538) - Biological Process: photosynthesis (GO:0015979)	11
2	119948	Photosystem I reaction center protein PsaF subunit III - Cellular Component: photosystem I reaction center (GO:0009538) - Biological Process: photosynthesis (GO:0015979)	11
5	130246	Photosystem I reaction center protein PsaF subunit III - Cellular Component: photosystem I reaction center (GO:0009538) - Biological Process: photosynthesis (GO:0015979)	11

Preceding Unigenes (2)

Unigene	Build
SGN-U243732	Solanum tuberosum #3
SGN-U243733	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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