Sol Genomics Network

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Unigene SGN-U268791

Unigene Basic Information

Unigene ID:	SGN-U268791
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268791
mRNA sequence:	Length: 2412 bp

>SGN-U268791 Solanum tuberosum #4 (65 members)
ATTTTCAAGGAATTAATACTAGCAGAGAGAGAGAAAAAATAGAAGAGATCTGAAGAGGGGTCTGACTAGTTTCTTCTCTCAAAAAATCTC
TCTTTTGAACGGCCCTCCCTAATTTTTGTCAAAAAGGGTATAATAGAGGGAGGGGTAACAGTCTTTTCTCTAAATCTTTGCATTTTGTTT
TTGCTATACTCAGATCAGGCACTTCTCGGTTTGTATTTCATTGAAATATGGGTGTAGAGGTGGAAGCTAAGTTAGTTCATGTTCCAGTTG
AAGCTGGAAGTGAACAGATCAATCTTCTGAAAGAAAATGGAAAGCCGAATCATGTTTCAGGGATTACTGAGCCAATAAAATTCGGCTCTC
ATGGGACTGAAGAACCTAAGAAGGAGGAAGTAAGCAGAATTCCTGTGAGCAATGTTCCAAAGGATGCGGTTGAGGATTGGCCTGAACCTA
AGCAGATCCATTCGTTCTATACTGTTAAATTTCGGAGATTTGACGACCCAAAACTGAAGGCCAGAATTGAACTGGCTGAAAAAGAGCTAC
AGAAAAAGAACCAAGCTAGATCTCAGATCATTGAAAAATTGAAGGCCAAAAGGGCTGAAAAATCAATTTTCATTGAACAAAGGAAAGCCC
TCAGTGCTGAGAATAAGGAATTTTGGAGTGCTATTGATGGTAAGATAAAGGAAATGGTACCTCTGCATGAGGCCCTGGGCCAGCTCCGCG
GTTCTAGGAATGCAGGCCGAGAGAGGGGTCCTACAGTGTGTTCATCTGAGGAGGAGCTCAATCATCTTATTAAGGGTCTGCAGTACCGCA
TTCAGCATGAAAGCATTCCTCTGAACGAAGAGAAGCAAATTCTTCGGGAAATCAAACAACTTGAAGGAACAAGGGAAGATGTTAAAAAGG
TTGCTGCTGCAAGGGCACAAATTCATGAGACGATGGGTGAAAAAGAATCAATCCAGAACCAGGTCAAACTTATGAATGTTGGCTTGGATG
GAGTTCGTAAGGGGCAACAGGAAGTTAAGGGCAGGCTTAAGATAATAGATGATCAGATTGATGCCATAAACAAACAGATCGGCATATTGG
ATGAGGAATTGAAGGGCGTTGTGGAGAAGAGGGACAAGACTTATGAACATATTCTGGAATTGAGAAAACTGCGTGAAGAAGGGAATTCTT
CTTTCTACCAAAACTCCAACGTGTTGCACAAAGTGAAACAACTTGCTGATCAAAAGGATGTTGGAGCCCTTAAAGAGCTCTCAGTTACAG
AGGTCGACAAGTTCATTTCTCTTTGGTGTGGTAGTAAGTCTTTTAGAGATGACTATGAGAAGAGACTCTTGCAGTCGCTTGATATTAGGC
AGCTGAGCAGGGACGGCAGGATGAGGAATCCTGGTGAAAAGCCACTGGTGTTACCAGAAGCACCTACTGTCTCCCGTGCTGAAGTTCCAG
CAAGAGCTAATGCAAAACCCGTTAAGGAAGATCATGCACCCGTTGATGCTGCTCCGATTCAGAAAGAACAGCAAGAGAAGAGTGGCAAGC
AGCTGAATGATGCTCATGGTAAAAACACAAAAAGCACAGAGAAAAAAGCTGTTGTTGTTGATGACGAGGAAATCTATGGTTTGGACCTAC
CCAAGGATATTAAGCCCAAGAAAACCGAAGTTGATGAGGCTACACTGAAGGAAATGAAGAAAGAGGAGGAGATAGCAAAAAATAAACAGG
CTATGGAGAGGAAGCGTAAGTTGGCCGAGAAAGCAGCTGCAAAAGCTGCAAAGAAAGCTCAGCTAGAAGCTGAAAAGAAGCTCAAGGAAC
GTGAGAAGAAAGCAAAGAAGAAGGGTGGATCTTCTGCTGCTGGTCAGGAACCAACCGAGGAACCAACTGAAACACCCGAGGAAATTGCTG
AGGAAGAAAATGCAGAGGAGACTGTTGAAACAGCCGTTGCACCCAAGGTCAAGGCACGGAAAGATAACACCATCAGGCACAGAGCAACAC
GCGCAAGAGGGTCTGAGCTTCCCAAATCTATACTAAAGCGCAAGAAAGCAACAAACTACTGGCTATGGGCAGCTGCTCCTGCTGCACTCG
CGATTCTGGTACTTCTAGTCATCGGATACATGTATCTTCAAAAGTAGAAAGAGGCGGGGGAAACTGGAGAGTGAAAACAAAACAAAACAA
AAAACAAAAACTTTGGCTTTAGTGTTTTTTTTTTTTTGGTTTACAATACTGCAATAGCAAGTACTGTTTAGTTTGATCATAACAGTATTT
CTTTTTTCTTGCATCCTATATAGTTTAGGATGGAAAACTCATAAATGTGTTGCTGGTAGATGTGCGGCCTATCTTGAGATTACTTACTGA
GAGACAGTCTACATGTTTTTATTTTTGTTGCTGTAGTTGCAATTATATTGACATTTTGCTTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	10
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	14
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (65)

Alignment image suppressed for unigene with 65 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	379	Myosin_tail	45
2	22632	Myosin_tail PrefoldnKE2 Borrelia_Unk	23
5	57032	Myosin_tail PrefoldnKE2	18
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	119067	Chorismate mutase - Molecular Function: chorismate mutase activity (GO:0004106) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Prefoldin	21
5	129649	Prefoldin	17

Preceding Unigenes (2)

Unigene	Build
SGN-U243838	Solanum tuberosum #3
SGN-U250516	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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