Sol Genomics Network

Unigene SGN-U268742

Unigene Basic Information

Unigene ID:	SGN-U268742
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268742
mRNA sequence:	Length: 3668 bp

>SGN-U268742 Solanum tuberosum #4 (61 members)
TTTTTTTTAAAGAGGAATTCTCAAAATTGTTAACTAGAGAAATCTGATGACTTCCAGCTGCAGCAGTAATGCCCTATGACATTATGTTAT
CAAATATCAAAGAAAGCTGAATGAATTACAAACTGTATACACAAAAACCATGTGCCCAGATGCTCTTTATCTCAAAGCTTTGACAGAGCT
GAATTTATCGATAGCTCGTAACCCTTCTTATTTTCCGAAAATTACAGCCACACGCGTAAAGATTTTCTAAAAACCTAAAAAATAACAGCA
TGATAGTCCTGCTGTGTACTTCGTAGTTGACAATTGATTTATTTGGAACGGAACCTGCTGCTGACTGCATCGTATGATGGGAGGGAGAGA
ACATCTCCATAGGATGCCATGGTCAGAGGAGAAGAAATAAGCTTCTGCACAACGGAAGCAATATCTTTTGCTGAAACTGCATCAATGGCT
TTCAAGAAATGCTCCACTGGATTCCTCTCTCCATATGTCAAAAGTTGTCTGCCGATATCTTCTGATGCAACCATCCGGGATTCCAAGTTC
ATCAGAATGGCAGACTTTGTTGCCTGTTTAGCACGGTTTAGCTGTACTTGGTCAACTTCACTAGGGTTTGCTACCGCAATAAGCTCTTTA
ACTGCTACATCAACAGCTTGAGGCCCAAAATCAGAGCTCGTAGTTCCTTGAATTCCAAATAGTCCAGTGTTATTGTAAATGCTGCTGAAT
GCAGAGAATGCGTGAATCTGTGGGTACTGATTTAAGACACGAAGATATAATCTTGAGTACATCCCTTTTCCAGGACCGCCAGCTGAGAAA
GATCCACCTCCTCCCATAAGCATCTGAAGAACTGTTAAAGTCATTGATTCTTTTTCAGACATCCAGCCACCGGGAACTTCAAAGGCAAGA
GCAAAATGAGTCATCTCTGCATCGGCTTGACAGCGGTAATCTCCTCCCACATACACAGGTTTAGGTTCTTCAATGGTGGCCACCTTAGGT
AAATCAGACAGAAGAGGTTCTGCAACTTTTAAGAATTCTTCATGTTCAACACCAGATGCAGCAAGAACCATCCGAGGAGCAGTATAATTC
TCAGCTACAAACTCCTCCAGCACTGTGCTGTTTAACCTGTTTATTGTAGCTTCTGTGGCCATCAGAGAATTCCCATATGGACCAGCATAA
CCAGCAGAATGAACTGCCTCCAAAAGCAAGTGTTGAGGGTTTTTGGAGTACTCGCTAATCTCAGCTTTAACCTTCTCAAGCTGTTCTTTA
ACTTCCCAATCCAGGAATGCAGGATTTCTAACACAGTCAGCAAGCATCTCCACCATTTGTGGTACATAAGTTTTCAAAGCATCATAAGTG
TAGATCATATGCTCTCGTGAGGCTGAAGCTGTTACATTACCACCAATTGCTTCAATTTCTCGTACAATACGCAAGTGACTCCGGTTTAAT
GTGCTTTTGAAGGCCATGCGTTCCAAGAGGTGTGTGGCTCCATATGAAGCTGGTGTCTCATAAATAGAGCCACAGTCAACATAGAGGCCA
ATTGAGGCAGCAGGGTTCACCGATGCTTCAGAGGCCACTTTGAGACCATTGGCGAGAGTCGTTATCTGGGTCTTTGCAGGTTCTACATAA
TCAGGTAATGGTGGCGAGAGTTTAACATCATTGAGGGGGAAATCCAAGGGAGTCACTGAACTTGACGTATCACCAGTTATCCAACTAAAA
AGACCCCCAGATGGCTTGGTTGCAACAGCAGCTGAACTTGAAAATCTTGTCAAGACCCTGTTGCCTTGACGTGCCTTAAGAGAGCTGAGG
CGAGACGATGCGCATCTGTACATTTTGACGGTGATGATCGGAGAACTGAGTAGAGCTCCGGGAAGATGAGAAAAGCGATTTTGTAGGGGG
GAAAAAATCAGTGAGGCTACCTAAAATATTAAGTGTGTATTTACATTTTCGTTTCCCCCTCTCTAACATCCCGCTTCTTTAGATCCCTTT
CTGTTGTCGTCTGTCTTTCAAAAGAGATTTTCAATTTCAAAATCTTTGAGAAATTTTATAGAAAAATCAAACTCCCTTTTGGGTGTTTTA
TTTTTGAAAGCCAGGTGATCCAGAACAGAGATCAAGGTTCTCTTTTTAAAAAAAAATTGTTTTCTTTGTTCAAACAACCAGAAGGGTCTG
TTTTTGAATCCCTGAGGTTGGTTTTTGGTTCTTTGATTTGTAGAAAGCTTGTTAACTCTTTTTTTATTTATTTTATAAATCTCTACCTGT
TCTGTAGCTTTGATATTAGAAACAGGTAATTTTTGTGTGTTTTGATATTAACCATGGCAGCAGCTATAGATATATACAGCAGCAGTAACT
TCTCAGATCCTTTAACAGAAGAACTTATGAAAGCACTTGAACCTTTTATGAAAGGTGCTTCTTGTTCTTCTTTTTCTTCATCTTCACCTT
CTTCTTCTTCTTCTTCTTCTTCTTTCTATACTTTTGGTGAGCCTAATTTGTATACTGATTTCTGTGCAATCCCATCAACGGCTACCCAAA
TGTTTTCTCAAGGGTATTCATGTTTTAACAATATGGGTGTAGCTGAAACAGGTTCAATTGGGCTTAACCATCTAACCCCTTCTCAGATAT
TGCAAATCCAAGCTCAGATCCAATTCCAGAATCAACAGCAACTACTACAACTGCATCAACAACAACAGAGCTTAGGTTTGTTAACACCTA
CTTCAACATATTCTAAGAATCTGAATTCTACGAACTTTCTTGGTATGAAACCAGTCCCGATGAAGCAAACTGGTGGTGCTTCTTCACAGA
AGGCTACTAAGCTTTATCGTGGAGTTAGACAACGCCATTGGGGTAAATGGGTTGCTGAAATTAGACTTCCTAAGAACAGAACCAGGCTTT
GGTTAGGCACTTTTGATACAGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCTGCTTATAAGCTAAGAGGAGAGTTTGCTAGACTTAATT
TTCCACATCTAAGACATCAATTAAATAATGAATTCTCGCCTTTACATTCCTCCGTTGATGCTAAACTTCAAGCCATTTGCCAAAGCTTGG
CTAATCCCAAATCAGATGACTTGTGTTCTAAATCTAATTCCAAGCCAAGAAAGTCCAAAACCGCAGCAGCAGCAGTTCCAGTGGATTCAA
ATTCAGCTCAAGAATCTTCATCAAAGTCCGAAATCACCATAGATGATTCATTGAAAGGAGAATTCAGCTATCCAGAAAATGCTAATATCA
AGATTGAGGCATCATCATCATCTCCTGCACCATCTGAGGAATCATCATCTTCGCCTGAGTCTGATATTACTTTCTTGGATTTCGCTGAAC
CACCATCTTTCGATGAATCAGAAAATTTCTTCTTACCCAAGTACCCTTCAGTGGAGATTGATTGGGCAGCTCTTTGTAACTTATTGTAGT
ATTACTTGTGTTTTTTTTTTTAGAAATATATCATGTATGGCCTCCTGCAATGGTGTTTTTGACATTTGCAGAGGTTGGTCTAGTAGTTAA
TAGAGTCATGTGAGTATGTAATAGTAAGGTCACTCACTCTCCATCTTGTTCATGCTGTGGTTTTTGTATATGCATGAACCAAAAGGGAGA
GACTTTGTATGTGTCTTGTTGATTTCTTAGCTTAATATAATCATTTCGAATGTTTAGTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X66284	X66284 mitochondrial processing peptidase

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	7
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	8
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	11
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (61)

Alignment image suppressed for unigene with 61 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71792 (1081 Aa)

QRAAQSISTEGYLGKKKFSDSSKDGGSAKSKKVISDSGEDDDSSDGAGDDDDASILILAFSGXAEFSFQXIIYGDFGLXXRFLAEFESTG
TAAAAVLDFLGLELDLEHKSSDLGXSQALANGLKFSINGGXVKARIHYLIDVLDXGKLSLQTLLLAYKQLCHKPKQLLQLYQKCLTKAGS
VLRKSNFSNPFTPMALSNSTIKLSSLLEEAPPVCFIGTGFIPRKFVEFRFLEYVEVGVNKPKLVVVDAVVVVAVDSGIGSELGFAISEKG
LDGXSPIEPVSATPILLKHETLEKTFXVAVDGIAQKSVYKLAHQKYXKEEEEEEEEGEDEEKEEQEAPFIKGSSAFISSSVKGSXEVTAA
DISIAAAMVNXQNTQKLPVSNIKATEQVEIYKINKKRVNKLSTNQRTKNQPQGFKNNPSGCLNKENNFFXKKRTLISVLDHLAFKNKTPK
REFDFSIKFLKDFEIENPFERQTTTERDLKKRDVREGETKMKYTLNILGSLTDFFPPTKSLFSSSRSSTQFSDHHRQNVQMRIVSPQLLK
ARQGNRVLTRFSSSAAVATKPSGGLFSWITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVD
CGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLE
KVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVAT
IEEPKPVYVGGDYRCQADAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIY
NNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAV
SAKDIASVVQKLISSPLTMASYGDVLSLPSYDAAAAGSVPNKSIVNYEVHSRTIMLLFFRFLENLYACGCNFRKIRRVRAIDKFSSVKAL
R

SignalP predicts non-secretion with a score of 0.066

IPR001431 Peptidase M16, zinc-binding site
IPR007863 Peptidase M16, C-terminal
IPR011765 Peptidase M16, N-terminal

Prediction based on longest six frame method

>SGN-P210582 (533 Aa)

VASLIFSPLQNRFSHLPGALLSSPIITVKMYRCASSRLSSLKARQGNRVLTRFSSSAAVATKPSGGLFSWITGDTSSSVTPLDFPLNDVK
LSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASA
SREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTV
LEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDYRCQADAEMTHFALAFEVPGGWMSEKESMTLTVLQM
LMGGGGSFSAGGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQA
TKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAVSSRFRSK

SignalP predicts non-secretion with a score of 0.165

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	763	Peptidase_M16 Peptidase_M16_C	25
2	23693	Peptidase_M16 Peptidase_M16_C	11
5	57775	Peptidase_M16 Peptidase_M16_C	11
1.1	101620	Peptidase M16 C-terminal	57
2	120129	Peptidase M16 zinc-binding site - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) Peptidase M16 N-terminal Peptidase M16 C-terminal	10
5	130418	Peptidase M16 zinc-binding site - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) Peptidase M16 N-terminal Peptidase M16 C-terminal	10

Preceding Unigenes (3)

Unigene	Build
SGN-U243873	Solanum tuberosum #3
SGN-U244641	Solanum tuberosum #3
SGN-U244642	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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