Sol Genomics Network

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Unigene SGN-U268656

Unigene Basic Information

Unigene ID:	SGN-U268656
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268656
mRNA sequence:	Length: 740 bp

>SGN-U268656 Solanum tuberosum #4 (41 members)
GAGTTCTGCATCTCTTCGCCAGTTAACGAAGCAGCCGCACCGCAGAGAAGGATTTGAAACCCTAATCATGTCGCTTGTTGCCAATGAAGA
ATTTCAGCACATTCTTCGTGTTCAAAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCG
TCGTTTTGCTAACATTGCCTGCAAGAAAGCCGATATCGACATGAGCAAGAGGGCTGGTGAACTTACTGCTGCTGAACTCGATAGCTTGAT
GGTTGTTGTGGCAAATCCTCGTCAATTCAAAATCCCTGATTGGTTTTTGAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGT
TACATCTAATGCACTGGACATGAAGCTTAGGGATGACCTGGAACGCCTGAAGAAGATCAGGAATCATCGTGGTTTACGTCACTACTGGGG
TCTTCGTGTGCGTGGTCAGCATACTAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAATTGCCTTCTCCTGA
GCCAATTTTGCATGTTTTATGCTATTTCATTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTAGTTTTATAATTTTGTTGAATG
TAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCGTTTGTTACTAATGAAGTTCAATTTTC
TACCCCTTTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (41)

Alignment image suppressed for unigene with 41 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	854	Ribosomal_S13	22
2	22960	Ribosomal_S13	17
5	57072	Ribosomal_S13	17
1.1	102092	Ribosomal protein S13-like H2TH Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	22
2	119306	Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S13-like H2TH	17
5	129650	Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S13-like H2TH	17

Preceding Unigenes (1)

Unigene	Build
SGN-U243582	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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