Sol Genomics Network

Unigene SGN-U268538

Unigene Basic Information

Unigene ID:	SGN-U268538
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268538
mRNA sequence:	Length: 983 bp

>SGN-U268538 Solanum tuberosum #4 (35 members)
CGCATTTAGGTCCACAGTCACATTCCCTCTTGCCCTCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGAGATGGGTGAAACAC
CAGTTCCAGAGTCAGTCTTGAAGAAGCAGAAGAGGAGTGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGA
ATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTACGCAGAACAGGACAAGGAATTGATCCGTTTGAAAC
GCGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGGATACGCGGGATTAACGCTATGCCTC
CACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGATCTTTAATGGGGTCTTTTTGAAAGTTAACAAAGCCACAGTGAACATGT
TGCATAGGGTTGAACCTTACGTAACCTATGGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTATGGAAAGCTTG
ACAAGCAGAGAATTCCTTTAACCGACAATTCCGTCATTGAGCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACG
AGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGA
AGAGAAATCACTACGTTGAAGGTGGTGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAA
ATTTTGTTTTCTAGGCATATTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGGTTTATGATAGTATACGACATTA
TTTTTGTTTTAATTCCCCCAGTTTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTTGGTTTCAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	65	3Beta_HSD	184
2	22015	3Beta_HSD	144
5	56492	Ribosomal_L30_a Ribosomal_L7_euk Ribosomal_L30	37
1.1	101435	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	166
2	118460	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	116
5	129264	Ribosomal protein L30 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal L30 N-terminal Ribosomal protein L7 eukaryotic form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) - Molecular Function: transcription regulator activity (GO:0030528)	28

Preceding Unigenes (2)

Unigene	Build
SGN-U243789	Solanum tuberosum #3
SGN-U259256	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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