Sol Genomics Network

Unigene SGN-U268498

Unigene Basic Information

Unigene ID:	SGN-U268498
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268498
mRNA sequence:	Length: 2698 bp

>SGN-U268498 Solanum tuberosum #4 (104 members)
CTATTTTCTTCATCTTCAATTTCATCACAAAAGAACCAGTCTTCACCGGTTCTATACCTTTTTTTCCTAAAGAAAAATGGCATCTCACGT
TGTTGGATATCCCCGTATGGGCCCAAAGAGAGAGCTGAAATTCGCTCTCGAGTCTTTCTGGGATGGAAAGAGCAGTGCTGAGGATTTGAA
GAAGGTCTCTGCAGACCTCAGGTCATCCATCTGGAAACAGATGTCTGATGCTGGCATTAAGTACATTCCCAGCAACACATTCTCTTACTA
TGATCAGGTGCTCGACACAACCGCAATGCTTGGTGCTGTCCCATCTAGGTACAACTGGACCGGTGGTGAGATTGAGTTCGGTACTTACTT
CTCCATGGCCAGAGGAAATGCCTCCGTCCCTGCTATGGAGATGACTAAGTGGTTTGACACCAACTACCACTTCATCGTCCCTGAGTTGGG
ACCTGATGTTAACTTTTCTTATGCTTCCCACAAGGCAGTAAATGAGTACAAAGAGGCCAAGGCGCAAGGAGTAGACACTGTTCCAGTTCT
TGTTGGTCCAGTTTCATACTTGTTGCTATCCAAGCCTGCTAAGGGTGTTGAGAAATCTTTCCCCCTTTTGTCACTTTTGGACAAAATCCT
TCCAATTTACAAGGAAGTTATCGCTGAGTTGAAGGCAGCTGGTGCTTCTTGGATCCAGTTAGATGAGCCCACACTTGTGTTGGATCTAGA
GTCTCACAAATTGGAAGCATTCACCAAGGCCTATGCTGATCTCGAATCATCTCTATCTGGCCTTAATGTTCTCGTTGAGACCTACTTTGC
TGATGTTCCTGCTGAGGCATTCAAAACCCTCACTGCTTTGAAGGGAGTTACCGCCTTTGGCTTTGACTTGGTCCGTGGAACTCAGACCCT
TGAGTTAATCAAGAGTAGCTTCCCTTCAGGCAAGTACTTGTTTGCAGGAGTGGTTGACGGAAGGAACATCTGGGCAAATGATCTTGCTGC
ATCTCTTGCTCTCCTGCAATCTCTTGAGGGAGTTGTAGGAAAAGACAAGCTTGTTGCCTCTACATCTTGCTCCCTACTCCACACTGCTGT
TGATCTGATCAACGAGACAAAACTAGATGATGAAATCAAATCATGGTTGGCATTTGCTGCCCAGAAGGTCGTTGAAGTGAATGCTTTGGC
CAAGGCATTGTCTGGTGCCAAGGATGAGGCATTTTTCTCTGCTAATGCTGCTGCTCAAGCTTCCAGGAAGTCTTCCCCAAGAGTGACAAA
TGAAGCTGTTCAAAAGGCTTCTGCTGCTCTTCAAGGATCTGACCACCGCCGTGCTACAAATGTTAGTGCTAGACTCGATGCCCAACAAAA
GAAGCTTAACCTACCAATCCTGCCCACAACCACCATTGGATCCTTCCCTCAGACAGTGGAGCTTAGGAGAGTTCGTCGTGAATACAAGGC
CAAGAAGATCTCTGAGGAGGAGTATGTTAAGGCCATCACCGAGGAAATCAAGAAGGTTGTCGATCTCCAGGAAGAACTTGACATTGATGT
CTTGGTTCACGGAGAGCCTGAGAGGAACGATATGGTTGAGTACTTCGGAGAGCAGCTCTCTGGTTTTGCTTTCACTGCCAATGGATGGGT
TCAATCTTATGGATCTCGATGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCTAAGCCAATGACCGTCTTCTGGTCCTCAAA
AGCTCAAGAGATGACCAAGAGGCCAATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTTAACTGGTCTTTTGTCAGAAATGACCAACC
TAGGTTTGAGACTTGCTACCAGATTGCTTTGGCCATTAAGGATGAGGTGGAGGATTTGGAGAAGGCTGGAATCACTGTCATCCAAATTGA
CGAAGCTGCATTGAGAGAGGGATTGCCTCTTAGGAAGGCTGAGCACGCTTTCTACTTGAACTGGGCCGTTCACTCTTTCAGAATCACCAA
CGTCGGTATCGAGGACACCACACAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATTATCCACTCCATCATCGACATGGATGC
TGATGTGATCACCATTGAGAACTCACGTTCTGATGAGAAGCTTCTCTCAGTTTTCAGGGAGGGAGTGAAATACGGAGCTGGTATTGGCCC
TGGTGTCTACGACATCCACTCTCCAAGAATACCATCAACCGAAGAGATTGCTGACAGAGTTAACAAGATGCTTGCAGTTCTTGACACCAA
CATCTTGTGGGTGAACCCCGACTGTGGTCTCAAGACTCGCAAGTACACCGAGGTGAAGCCAGCCCTGCAAAACATGGTGTCTGCAGCCAA
GACCATCCGCACTCAGCTCGCCAGCGCCAAGTGAGTTGAATATGCCACTGGAGGATTCTTGAATCAACTATATGGTGGTCATTGAACTTG
AATGAGATACTTTTTCTGTTGATTTTAATAATTTGTATTGCTGATGAAATATTATTGTGTAGATTAGTCTGCCCTCTGGGCCATTTGCTG
ATTTTTTTTCATTAATGTTTTGGAGCTTTTTTCTTGATTGTTTTCGGATTTCCTTATTACTATACCGGCAAGCGGATTCATGTATTTTTT
GGAGAAGAAATCAAAGAAATATTAGTCCGTTTATGCTAAAAAAAAAAAAAAAAAAAAACATAAAAAANCTCGAGGGGGGGCCCGTACC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ms	methionine synthase	methionine synthase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	7
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	8
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	6
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	11
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	29
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	9
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (104)

Alignment image suppressed for unigene with 104 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P210338 (767 Aa)

RKMASHVVGYPRMGPKRELKFALESFWDGKSSAEDLKKVSADLRSSIWKQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPSRYNWTGGE
IEFGTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVNEYKEAKAQGVDTVPVLVGPVSYLLLSKPAKGVEKSFPLL
SLLDKILPIYKEVIAELKAAGASWIQLDEPTLVLDLESHKLEAFTKAYADLESSLSGLNVLVETYFADVPAEAFKTLTALKGVTAFGFDL
VRGTQTLELIKSSFPSGKYLFAGVVDGRNIWANDLAASLALLQSLEGVVGKDKLVASTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKV
VEVNALAKALSGAKDEAFFSANAAAQASRKSSPRVTNEAVQKASAALQGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRR
VRREYKAKKISEEEYVKAITEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPM
TVFWSSKAQEMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKAEHAFYLNWAV
HSFRITNVGIEDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRVNKM
LAVLDTNILWVNPDCGLKTRKYTEVKPALQNMVSAAKTIRTQLASAK

SignalP predicts non-secretion with a score of 0.1

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71550 (782 Aa)

MASHVVGYPRMGPKRELKFALESFWDGKSSAEDLKKVSADLRSSIWKQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPSRYNWTGGEIE
FGTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVNEYKEAKAQGVDTVPVLVGPVSYLLLSKPAKGVEKSFPLLSL
LDKILPIYKEVIAELKAAGASWIQLDEPTLVLDLESHKLEAFTKAYADLESSLSGLNVLVETYFADVPAEAFKTLTALKGVTAFGFDLVR
GTQTLELIKSSFPSGKYLFAGVVDGRNIWANDLAASLALLQSLEGVVGKDKLVASTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVE
VNALAKALSGAKDEAFFSANAAAQASRKSSPRVTNEAVQKASAALQGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVR
REYKAKKISEEEYVKAITEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTV
FWSSKAQEMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKAEHAFYLNWAVHS
FRITNVGIEDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRVNKMLA
VLDTNILWVNPDCGLKTRKYTEVKPALQNMVSAAKTIRXSARQRQGVEYATGGFLNQLYGGH

SignalP predicts non-secretion with a score of 0.101

IPR002629 Methionine synthase, vitamin-B12 independent
IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	862	Met_syn_B12ind Methionine_synth	22
2	22675	Met_syn_B12ind Methionine_synth	22
5	56867	Met_syn_B12ind Methionine_synth	21
1.1	102007	Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	25
2	118935	Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	25
5	129356	Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243400	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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