Sol Genomics Network

Unigene SGN-U268398

Unigene Basic Information

Unigene ID:	SGN-U268398
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268398
mRNA sequence:	Length: 1875 bp

>SGN-U268398 Solanum tuberosum #4 (70 members)
CGTCGTCTCATTTGCCTCCAGAGGAAAACCGGAGCGGCGACCACCTTGCTTGACAAAATGGCGCAAGAATCACTTGTCCTTCGCGGCACC
ATGAAAGCCCACACCGATTGGGTCACTGCCATCGCCACCCCAATTGATAACTCCGACATGATCGTTACTTCCTCCAGGGACAAGTCCATC
ATTGTCTGGTCTCTCACCAAGGACGGTGCACAGTACGGTGTCCCCCGCCGCCGTCTCACCGGACACGGACACTTTGTTCAGGATGTTGTT
CTCTCCTCCGACGGTATGTTTGCTCTCTCTGGTTCTTGGGATGGAGAGCTTCGCCTTTGGGATCTTCAAGCCGGCACTACTGCTCGCCGT
TTTGTTGGTCACACTAAGGATGTTCTCTCCGTTGCTTTTTCCGTTGATAACCGTCAGATTGTGTCCGCTTCACGGGACAAGTCTATCAAG
CTTTGGAACACTCTCGGTGAGTGTAAGTACACCATTCAGGACGGAGACTCACATTCCGATTGGGTTTCGTGTGTGCGTTTCAGCCCAAAT
ACTCTTCAGCCAACTATTGTTTCTGGTTCCTGGGATCGTACTGTGAAAATCTGGAACCTTACGAACTGTAAGCTGCGTTCGACTCTTGCT
GGACACTCTGGCTATGTGAACACGGTGGCAGTGTCACCTGATGGTTCCTTGTGCGCTAGTGGAGGCAAGGATGGAGTTATTTTGCTCTGG
GATTTGGCTGAGGGCAAGAAACTCTACTCGCTTGATGCCAGTTCCATCATCCATACTCTCTGCTTTAGTCCTAACAGGTACTGGCTCTGC
GCCGCCACTGAGTCTAGCATTAAGATTTGGGACTTGGAGAGCAAGACCATCGTGGTGGACCTTAGAGTTGATCTCAAGCATGAGAGTGAG
ATGGCTGCTAATGAGAGTGGAACTGCACCAAAAAACAAGGTCATTTACTGTACCAGTTTGAGTTGGAGTGCTGATGGAAGTACACTTTTC
AGCGGATATACAGATGGTTTGATTAGGGTCTGGGGTATTGGGCGTTACTAGGAATGAATTGCATCTAGGCAAGCCTTTGGGCAATAGTCC
ATTAAAGACGTTTAGATTTCTCTTAAAAATGTTTGACGACAAGTATCTGGATTCTCCTTGTTTCTCATGAGTTTGAGAGTTTTGATGTTC
CATTTTTGGAATTCTGTTTAGAATTTTGTTACAAGCTTATGTTGCTACACTTCAATTTGGTTCGCCATGTATGTTATTCCTCCCCGGCTC
GTCCTGTTATGTTTTCAATTCTTTGACCTAATACATGGTTGGATAAGAACCTGTTAGTCAGCCTTTTGAATTAAAAAACCTCGTGCCGAA
TTCGGCACGAGGCCAGGACAAAGGACTCGTTACTGTTTGGTCTGCTCCCAACTACTGTTATCGCTGTGGAAATGTTGCTTCAATATTGAG
CTTCAATGAGAATATGGAGAGAGAGGTGAAGTTCTTCACTGAAACTGAAGAAAACAATCAGATGCGAGGACCCAGGACAGGAGTACCTTA
TTTCTTATGAGTGCGTTCTTGCCTTCTTGATTGATATTATTTCTGCACTCTGTGCTGTCCCTTGTTAGAGGGAAATTGAAGCGGAAACTA
TCTACTTGTCGGGAACCAGATTGCTGTGTGGCTTGCTTCTCTCATAAGATGGCGATACATACCTAGCTTGTTGGGCTGATCCTGCTTTCG
AATAGTTTGTGCTATGTATTCACAATGGCCTTTTAATGTTTGTTCCCCATCTGTTCCATAATTATTCTTACCTGTGTCATAGTTTGAACT
CTACTCAAATCAGATTACGAGATGTTAGATTTCTTCTTGCAATGCTAGAGTACACTTCCTTGAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ284489	ArcA2

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	6
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	8
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	13
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	6
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (70)

Alignment image suppressed for unigene with 70 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	6	WD40	833
2	22056	WD40	91
5	57083	WD40	17
1.1	101368	WD-40 repeat	806
2	118510	WD-40 repeat	72
5	129797	WD-40 repeat	15

Preceding Unigenes (2)

Unigene	Build
SGN-U243341	Solanum tuberosum #3
SGN-U267197	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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