Sol Genomics Network

Unigene SGN-U268344

Unigene Basic Information

Unigene ID:	SGN-U268344
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268344
mRNA sequence:	Length: 1127 bp

>SGN-U268344 Solanum tuberosum #4 (54 members)
CACTTCATTCCCCACAGCCCCAAGCGCCGGCGGAGGCTTAATCGACGAACAACAATGGCCTTCATCAAAGTCCAGAAGACTAGGGCTTAC
TTCAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTATAGAGCCAGGAATCGTCTGATCAATCAGGACAAAAAC
AAGTACAACACTCCAAAATACCGTTTCGTTGTTCGATTTACTAACAAGGACATAATTGCACAAATTGTGTCTGCTAGTATTGCTGGTGAC
ATGATTCTTGCTTCTGCTTATGCAAGCGAGTTGCCTCATTTTGGACTTAAAGTTGGATTGACGAACTATGCTGCTGCATACTGTACCGGA
CTTCTTTTGGCAAGGCGAGTTCTCAAGAAGCTTGAAATGGATGAAGAATATCAAGGAAATCTTGATGTCAACGGAGAGGACTACTCCGTT
GAACCTGCTGAAAGCAGGAGGCCTTTCCGTGCTCTCTTGGACGTCGGCCTCTTGAGAACTACCACAGGGAACCGTGTTTTTGGTGCTCTC
AAGGGTGCATTGGATGGTGGGATCGACATCCCTCATAGCGAGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCGATGCAGAA
GTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATGAATACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTC
AGCTTATACATCAAGTCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCATACGTGCAGACCCAAGCCCA
AAGAAGTCTGGAAAGCAACCTCCCAAGACACACAAGAGGTACAACCTTAAGAAGCTGACTTATGAAGAGAGGAAAGCTAAGTTGATCGAG
AGACTCAATGCTTTGAACGCAGCTGGTGGAAATGATGACGACGATGAGGAAGACGATGATTAGTGAATTTGTAGAACTACTTTGAATCCT
TGTTGCCTTAAGGTTTTCAATTAATATTGTGTTTCTTTTGCTACTAGGTAGAAACCTCAGTTTTGCATGCTTAGTAGAATGAGACTTGTC
AATTTTGACAATGTATGGGATTATATTTTTACTTCAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	4
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	9
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	8

mRNA member sequences (54)

Alignment image suppressed for unigene with 54 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	587	Ribosomal_L18p Ribosomal_L5euk	31
2	22818	Ribosomal_L18p Ribosomal_L5euk	19
5	56962	Ribosomal_L18p Ribosomal_L5euk	19
1.1	101758	Zinc finger FYVE-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270)	40
2	119267	Ribosomal protein L18P/L5E - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) - Molecular Function: 5S rRNA binding (GO:0008097)	18
5	129613	Ribosomal protein L18P/L5E - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Eukaryotic ribosomal protein L5 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) - Molecular Function: 5S rRNA binding (GO:0008097)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U243392	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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