Sol Genomics Network

Unigene SGN-U268341

Unigene Basic Information

Unigene ID:	SGN-U268341
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268341
mRNA sequence:	Length: 1645 bp

>SGN-U268341 Solanum tuberosum #4 (8 members)
CCGCCGGCGGAGGCTAATCGAGGAGAAACAATGGCCTTCATCAAAGTCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTCAAATTC
AAGAGAAGGAGAGAGGGGAAAACAGACTATAGAGCCAGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAATATGGG
AATTATGGTTCGCGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGTGATGGA
GTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGAT
TTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCGAAGATCGTCAAGGCAATTCCCAAGGTTGATACG
CAGCAGGATGCGAGAAGTGGTGTGCAGAAGTTTAGGGTGAAGTTACTAGCTGAAAGTGGTGGACAGAGTACCCAAGATGTTCTTTGCCAG
ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGCG
GCGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCAAACAGTTACACAACC
AGTTCCCTATTAGATACAGTCACGGCTGCAGTTGTACAGTTCAAGGAGATGGGTGGAAGAATCAGGTCTTCTGAATCTCCAAAGGTGGCT
GAACAGCCTACTGAGAAGAAGAAAGGTCTTGCTGATTGGATTAATATAGTGAAGACCATCAATGAGGAGAAAGATCACTGGGTTCCTGAT
GAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCCTTTGTGCGCAGGCATCACTGTCGGAATTGTGGAGATATTTTCTGT
GACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGCTGAGGTTTCT
CGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTCGCCAAGAAGCTTCAGGAGGAGATG
GAGAGAAACCGAAAAGGATCATCTGGCTCCAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTG
CAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGT
TTTCCGTCAATGGAAGGAAGGACTGTAAACTCTTTTCTGGTTTTGTGTGTTCTCATACATTATTTTGTGCATCTGTTAATATTCGAACCG
TTTGTGACGCCCCTTTGGTTGGTACCCGTTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATTTTACACT
TTTTTTTCTTTACATGGAGAAAATTTAAGTGAATTTGATTCCATTAACTCAAGTTTAAATTAATTTGATTTCTTAAAAAAAAAAAAAAAA
GTTGAAAAAACTCGAGGGGGGGGCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	587	Ribosomal_L18p Ribosomal_L5euk	31
2	23875	Extensin_2 Znf_PHD Znf_LSD1 Znf_FYVE	10
5	58492	Extensin_2 Znf_PHD Znf_LSD1 Znf_FYVE	8
1.1	101758	Zinc finger FYVE-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270)	40
2	120935	Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger FYVE-type - Molecular Function: zinc ion binding (GO:0008270)	7
5	131185	Zinc finger FYVE/PHD-type - Molecular Function: zinc ion binding (GO:0008270) Zinc finger FYVE-type - Molecular Function: zinc ion binding (GO:0008270)	7

Preceding Unigenes (3)

Unigene	Build
SGN-U250623	Solanum tuberosum #3
SGN-U259098	Solanum tuberosum #3
SGN-U259099	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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