Sol Genomics Network

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Unigene SGN-U268303

Unigene Basic Information

Unigene ID:	SGN-U268303
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268303
mRNA sequence:	Length: 2427 bp

>SGN-U268303 Solanum tuberosum #4 (166 members)
CTGTAATTCAAGTGCAATCACACTCTACCACACACTCTCTAGTAGAGAGATCAGTTGATAACAAGCTTTGTTAACAATGGCGGCTTCCAT
TGGAGCCTTAAAATCTTCACCTTCTTCTAACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAGTATCCAGCAGAAATCTCTC
ATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTCCGATTCAATGTGAGAAGAAGTCC
ATTGATTGTGTCGCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTAGACCCAGATGCTAGCCGGAGTGTTTTGGGAATTAT
TCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCAGCCGTTCCACTTGGAGCAAATTATCGTCTGAT
TGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCCCTGAATCGCCACCT
TTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCGGCTCAACAAAGTCCAGAGAACCCCGA
TTGGTTCCAGGGCACGGCTGATGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATACTGTTCTTGAATACCTTATACTTGCTGGAGA
TCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGAGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGA
GAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGACGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCA
AGCAATGAAAGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTCATTGCCAGTATGGGTATATATGTCAT
TAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTCCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCACT
TGGGATGAGAGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTAC
AAAAAAGCCGGTGCCAGATTTTAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATCTACCACCATCAAAAATGCTTGA
TGCTGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCAT
ATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTATGAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGG
CAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATTAAAAGAGCCATTATCGACAAGAATGCCCGTATAGGGGACAATGTGAAGATCAT
TAACAAAGACAACGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACCGTCATCAAGGATGCTTTGAT
TCCAAGTGGAATCGTCATCTGAAGGAATGCGTTTTAACTTGGTTGTCCTCCTAGATTTTGGCTAAACAGCCATGAGGTAGAAACGTGCTG
AACTTTTATTTTCCTGTGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCCCTACAAGAGAAGACTGGATGCTG
TAAAAATTATTCGTCTAGAATAAAAAATAAATTACCCAAAAAAAAAAAAAGATCTCACTTTTGCTTTTAAGTTTACTCATGTTTTTTATC
TCTGTATGGTTATAGTGAAAAGGAATTATTTGTTATTAAAAAAAATATCATTGCAAGCACTACTATGGAGCTAAATATGGTATCTGTAAG
AAGTACAAACCATGGGGTCACAAGTATTATTGGGCAAAATATGCTTGCTACTGCTACTCACCTTGCCATTACTAAGAATCTTCCAGTGTC
TCATGGCTTGGTTTTGATTATGTAAACAAATAATTAAGAAGCTACCTATTTTATGTGTGTAACAATGTAATAAGGATGATTTATGTGTGC
AACTATTTTGCCCAAAGCTTTGCGTGATGAATAAATGTATTGTAGTGTATTGAATTCAACCAACATGAATGCTCTGCTGGTTGAACTGTT
TTAATGACATGGTTCACACATGGGTTTTATTCCCGATTGAAACAATTCATTTTGGTGATTTTTATAATTTTCTAAAACAGACAAAGTTCT
CGGGTCTTAATAAGAGGGGCAATTGTTGTTTTTTACATCAGTTTCTAATAAAGTGTGATTTATATATTTATATAATTGACAAGCGTT

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
AGPase1	ADP-glucose pyrophosphorylase small subunit	ADP-glucose pyrophosphorylase
agpb1	ADP-glucose pyrophosphorylase small subunit 1
adpglu	ADP-glucose pyrophosphorylase small-subunit	ADP-glucose pyrophosphorylase

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	10
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	7
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	9
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	7
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	32
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	8
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	15
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	45
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6
Solanum tuberosum	vSTmRNA		708	4

mRNA member sequences (166)

Alignment image suppressed for unigene with 166 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	748	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	25
2	22584	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	24
5	56801	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	22
1.1	101573	Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978) Trimeric LpxA-like	70
2	119093	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	20
5	129502	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243268	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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