Sol Genomics Network

Unigene SGN-U268276

Unigene Basic Information

Unigene ID:	SGN-U268276
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268276
mRNA sequence:	Length: 1659 bp

>SGN-U268276 Solanum tuberosum #4 (62 members)
CCCATTTCTCCCTTCATCTACATCTTCATCTCTTCTTCTTCTTCTCTCTCATTCTCTCATCAATTTTTTCACAAAAAAACTAAGAGAAAA
TGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTG
ATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGAC
GTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTG
ATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCG
ATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGG
GAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACA
CTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTAT
ATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTTTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTT
GCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGG
TGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGA
ACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATG
AACAGATGATCAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCAC
CAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCA
TGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATT
TGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATCAATATGAAT
CCTAAAGACTTGTCTACATTTGATATTTGTTGGTTTGTTCAATTTCTGCCAAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATT
TGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTAAAATGAATATACTGTATTACAGTAGCTTCTTATACTTGTT
TGTGTATTGCAGTTTCTTGCACTTAAGATACTATTCTAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tubst1	beta tubulin

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	7
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	9
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (62)

Alignment image suppressed for unigene with 62 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	68	Tubulin_FtsZ Tubulin Tub_FtsZ_C	172
2	22017	Tubulin_FtsZ Tubulin Tub_FtsZ_C	143
5	56318	Tubulin_FtsZ Tubulin Tub_FtsZ_C	83
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	128984	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	81

Preceding Unigenes (1)

Unigene	Build
SGN-U243325	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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