Sol Genomics Network

Unigene SGN-U268261

Unigene Basic Information

Unigene ID:	SGN-U268261
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268261
mRNA sequence:	Length: 867 bp

>SGN-U268261 Solanum tuberosum #4 (33 members)
CGAGGCGCATCTACTGAAGAGTCTCTCTGTGCTTAGATCTCACCGCCGCTTACACACTTGGTGAACCTCTCTCCTTTCCTTTGGCGAAGG
GTGAACAGGTTTCAACTGTTGTGTGGCCATGGCTTTGATTTTGCACTCAACAAATAACAACAAAAATGCCTCAAAGGCACTCATTGCGGC
TGAGTACACAGGTGTAAAGGTTGAACTTGCAAAGGATTTCCAGATGGGTGTATCAAACAACACACCTGAGTTTCTTAAGATGAACCCAAT
TGGAAAGGTTCCTGTGCTTGAAACACCTGATGGACCTGTTTTTGAGAGCAATGCTATCGCACGCTACGTTACTAAATTAAAGCCCAACAA
TCCTCTTTTTGGATCTTCATTGATTGAATATGCGCAAATTGAACAATGGAATGATTTTTCTGCCACTGAAGTTGATGCAAACATTGGACG
ATGGCTGTACCCACGCCTTGGCTATCGTGTGTACATCCCTGCGGCGGAGGAAGCTGTGGTAGCTGCATTGAAGAGAGCGCTTGGTGCTTT
GAACACCCATCTTGCATGTAACACATACTTGGTTGGGCATTTAATCACATTGGCTGACATCATTATGGGCTGCAACTTGAGCATTGGTTT
TAGAATGATAATGACCAAGAGCTTTACCAAGGAATTCCCACATGTAGAGAGATACTTCTGGACTGTGGTTAATCAGCCAAACTTCTGCAA
GATATTGGGTGAAGTGAAACAAGCTGAATCTATCCCAGCTGTGCAATCCAAGAAGCCTGCACAACCTGAAAAACCCAAGGCTAAGGAGGA
GCCAAAGAAGGAGGTTAAGAAGGAAGAACCAAGTCCTGTAGAGGAGGAAGCAGCACC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ241837	elongation factor 1-gamma

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	8
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	7
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	29	Mal_ac_isom	300
2	22504	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	27
5	57022	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	18
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119155	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19
5	129505	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243270	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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