Sol Genomics Network

Unigene SGN-U268260

Unigene Basic Information

Unigene ID:	SGN-U268260
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268260
mRNA sequence:	Length: 1709 bp

>SGN-U268260 Solanum tuberosum #4 (148 members)
CTCTTGTACCGAAGCACTACATATATAGAGCCCTCCACTCCGAAACCCTAAACCTCTTCAATCGCATCTACTGAAAAGTCTATCGTTTTG
CCTCTCCGCCGAAACACAAACACACTTGGTGAAGGGTGAACAAGTTTCAACTGTTGTGTGGCCATGGCTCTGATTTTGCATTCAACAAAT
AACAACAAAAATACCTCAAAGGCACTCATCGCGGCTGAGTACACAGGTGTTAAGGTTGATCTTGCAAAGGACTTCCAGATGGGTGTATCA
AACAAGACTCCTGAGTTTCTTGAGATGAATCCCATTGGAAAGGTTCCTGTGCTTCAAACACCTGATGGACCTGTTTTTGAGAGCAATGCT
ATTGCCCGCTATGTTACCAAAACGAAACCCGACAATCCTCTTTTTGGCTCTTCATTGATTGAATACGCTCAAATTGAACAATGGAATGAT
TTTTCTGCCACTGAAGTTGATGCAAACATTGCACGATGGCTGTACCCCCGCCTTGGCTATGGTGTATACATCCCTCAAGCTGAGGAAGGT
GCAGTAGCTGCATTAAAGAGAGCGCTTGGTGCTTTGAACACCCATCTTGCATCTAACACATACTTGGTTGGACATTGTATCACATTGGCT
GACATCATAATGGTCTGCAACTTGAGCATTGGTTTTAGGATGATAATGACCAAGAGCTTTACCAAGGAATTCCCACATGTAGAGAGATAT
TTCTGGACTGTGGTTAATCAGCCTAATTTCTGCAAGATATTGGGTGAGGTGAAACAAGCTGAATCTATCCCAGCTGTGCAATCCAAGCCT
GCACAACCTGAAAAACCCAAGGCTAAGGAGGAGCCAAAGAAGGAGGTTAAGAAGGAAGAACCAAGTCCTGTAGAGGAGGAAGCAGCACCC
AAGCCTAAGGCAAAGAATCCTCTTGATCTCTTGCCTCCAAGTAAGATGATTCTGGATGATTGGAAGAGGCTTTACTCCAACACCAAGACC
AACTTCCGTGAGGTTGCCGTGAAAGGTTTCTGGGACATGTATGACCCCGAAGGATATTCTCTCTGGTTTTGTGATTACAAGTACAATGAT
GAGAACACAGTTTCCTTTGTAACCTTGAACAAGGTTGGTGGTTTTCTGCAGAGGATGGATCTGGTACGCAAGTATGCTTTTGGTAAGATG
TTGATTGTTGGTTCTGAGGCCCCATTCAAGGTGCAGGGCTTGTGGCTTTTCCGTGGAAAGGAAATTCCCAAGTTTGTTATGGATGAAGTC
TATGACATGGAACTCTATGAATGGAAGGAAGTAGACATCAATGATGAAGCCCAGAAGGAGAGGGTTAGCCAAATGATTGAAGATCATGAG
CCTTTTGAGGGACAGGCTTTGTTGGACGCGAAGTGCTTCAAGTAAACTACATTGTATTGGAGATTCAGCAATGTTACATTTTTCCTGAGG
CTGTAGTTTACTCTGGTTTTGTCCTCCCAAATTTACTTAGATTCTTGTTTTAAACACTATCTTGTCTTAGAGAAACTATTATCTTTGCAG
TGTGTTTTTTAAGTTATTGATTTCACATAGTTCATGGGATATCTGTGGTTGAATTATGTTAATCCTTTTCGAGTAAAGCAGTTTTGACAG
TCAGGTGAAATTACCCCTTTCTATCATTTGTAAGTTCTATGTAGGTTGATCAACTTTTGCTTGATTTTTGTTGAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ241837	elongation factor 1-gamma

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	8
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	6
Solanum tuberosum	CSWB	Tubers	6124	4
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	7
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	7
Solanum tuberosum	SWST	Stolon	5942	12
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	26
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	21
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	22
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (148)

Alignment image suppressed for unigene with 148 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	29	Mal_ac_isom	300
2	22504	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	27
5	57022	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	18
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119155	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19
5	129505	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243269	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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