Sol Genomics Network

Unigene SGN-U268251

Unigene Basic Information

Unigene ID:	SGN-U268251
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268251
mRNA sequence:	Length: 1060 bp

>SGN-U268251 Solanum tuberosum #4 (53 members)
AGCAAAAGAGATTTTGAGAGTGGTGGGTGCTGTTGGACAATAGAGATCTACTGATTTCATCCTCTCTCATCGGCCGATCTTCGATTAACG
GAGATGGGGCTGTCTTTCACTAAACTCTTTAGTCGCCTCTTTGCAAAGAAAGAAATGCGAATTCTTATGGTTGGTCTCGATGCTGCTGGT
AAAACCACAATTCTGTACAAGCTCAAGTTGGGAGAAATTGTTACCACTATCCCAACCATTGGCTTCAATGTGGAGACTGTTGAATACAAA
AACATCAGCTTTACTGTGTGGGATGTTGGTGGTCAGGACAAGATTAGACCTCTATGGAGGCACTATTTCCAGAACACACAGGGCCTCATC
TTTGTGGTTGATAGCAATGACAGAGACCGTGTAGTTGAGGCAAGGGATGAGCTTCACAGGATGTTAAATGAGGATGAATTAAGAGAAGCT
GTGTTGCTTGTTTTTGCGAACAAGCAAGATCTTCCAAATGCAATGAATGCGGCTGAAATCACCGACAAACTTGGCCTTCATTCTCTCAGA
CAACGACACTGGTATATCCAGAGTACATGTGCTACTTCTGGAGAAGGGCTATATGAGGGACTGGATTGGCTTTCAAACAACATCGCCAGC
AAGGCCTAATGCAATGATGTGGTACTATGCTTCTTGCGTTGCTATATCCGGAGAAATAAACATCATTGTCTCGTCGTAATTTCTTTCGTT
TGGAGATTTTAAATATCTGTTCAGCTCACAATTCTGGGGAAGGCCTTACCCTTCTTCACTCTCTATGGTTTATCGTCAAAGAGCATGGCA
TAGTTTCCACATTGCTGGATGCACATTGGCAATGTAATGATATTTTAGTATAATATCTGGTTTTGAAACTTGGCGCAGCCGTGTGCACCA
TTTTGTTGTCCGGTGTGTCTGATGTTGGAATGGGTGTACAAAATGCAATACAGATAAATAGTAAGTATCGGAATTTTGCGAGTAGTAAGA
ATATCACCTGAGTTGCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
DQ228323	ADP-ribosylation factor 1
DQ284463	DQ284463 ADP-ribosylation factor 1
X74461	X74461 ADP-ribosylation factor 1

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSWB	Tubers	6124	6
Solanum tuberosum	IVROOT	Root	5850	9
Solanum tuberosum	MXLF	Leaves	6585	5
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	22020	ARF/SAR	137
5	56311	ARF/SAR	90
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118457	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	119
5	128986	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525) Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) ADP-ribosylation factor - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: rRNA processing (GO:0006364) - Biological Process: ribosome biogenesis (GO:0007046) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	80

Preceding Unigenes (1)

Unigene	Build
SGN-U243233	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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