Sol Genomics Network

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Unigene SGN-U268233

Unigene Basic Information

Unigene ID:	SGN-U268233
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268233
mRNA sequence:	Length: 1636 bp

>SGN-U268233 Solanum tuberosum #4 (165 members)
GAGAGAACTAGTCTCGAGTTTTTTTTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTCCATCACTACTTTCGAGGCGAGT
CGAACGAAGGACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCG
CTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAA
TGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAA
AGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAA
ACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAAT
TAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGCCCTGAACTTTGCATTCAA
GGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGC
TGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGA
GAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATG
TGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGATAGTTT
CTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGAT
GACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGG
TGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATA
CGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAATTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCA
GTTGGGGAGACAATTATCATTTTTCCTTTTGCCTTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACT
TGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCCAGAGCTTACAGATTCTGAATGAATCTATATG
ATAAAATCAAATGCGGATTAGTTTGGGACTAATGTTGTTTAAAGTGTGGTATACAATATTTTGCCCTTGCAAAAAAAAAAAAAAAAAACT
CGAGACTAGTTCTCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ant	ADP/ATP translocator	ADP/ATP translocator

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	6
Solanum tuberosum	ACDC	Sprouting Tubers	5177	6
Solanum tuberosum	CSCH	Tubers	5038	6
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	7
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	14
Solanum tuberosum	SWST	Stolon	5942	6
Solanum tuberosum	TBSK	Tuber Skin	4812	9
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	32
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	16
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	8
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	17
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	12
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (165)

Alignment image suppressed for unigene with 165 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	34	Mitoch_carrier	285
2	22005	Mitoch_carrier	166
5	56452	Mit_carrier Mitoch_carrier Aden_trnslctor	41
1.1	101398	Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	297
2	118462	Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	115
5	129139	Mitochondrial carrier protein - Molecular Function: binding (GO:0005488) - Cellular Component: mitochondrial inner membrane (GO:0005743) - Biological Process: transport (GO:0006810) Adenine nucleotide translocator 1 - Molecular Function: transporter activity (GO:0005215) - Cellular Component: mitochondrial inner membrane (GO:0005743) - Biological Process: transport (GO:0006810) Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	37

Preceding Unigenes (1)

Unigene	Build
SGN-U243195	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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